AMCG00011116


Basic Information

Item Value
gene id AMCG00011116
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 11833844 ~ 11839029 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00011116
atggAGGGATTGGAGAGATGGAGTGTCACACtgctggaggagggggagagctCACAGGACTGGCTGGAGAGGCAGATGGAGGAGAGATCACAGAGGGGGCAGGAGGTGCCATTCCTGGTGGCAGACCTGGGTCAGTTGGTACTCAGGCTCCAGCGCTGGCTCCACGCCCTACCCCGTGCTCGCCCCTTCTACGCCGTCAAGTGCAATACCTGTCCTGGTGTGCTATGCACGTTAGCACAGCTGGGCATTGGCTTCGACTGCGCCAGCCAGgaggagctggagctggtaCTGGGGCTGGGTGTGACCCCCCACAGGATCATCTTCGCCCAGACCTGCAAGGTGCTGTCCCACCTGCAGTACGCCGCTCAGCACGGTGTTCAACTCAGCACCTTCGATAGCCAGGCCGAGTTGGAGAGGGTAGCCCGGCACCACCCCCGCTCACGGATGCTGCTGCGCATCACCACCAGCGGTGCCAACTCCATCATCCCGCTGAGCACCAAGTTCGGGGCCCAGCTGAGGGAATGCGAACCACTGTTGGACAAAGCAAAGGAGCTGGGGGTGCAAGTTGTGGGAGTCAgtttccaTGTGGGCAGCCACTGCCAGGACCCGCACTCATTCTCCCAGGCCATCGCCGACGCCCACTCTGTTTTCAACCTGGGCCAGCGGCTGGGGCACACCATGACCCTGTTGGACATTGGAGGAGGGTTTCCTGGGGCCGACCACAGCGGGCCCTCTCTAGAGGAGTTTGCCGCAGAGATCAACAGCACCCTGGAACTTCATTTCCCAGAAGGCAGTGGGGTGGAAGTGATTGCTGAGCCAGGCCGTTACTTTGTGACCTCAGCCTTCACCCTGGCAACCAGGCTGATCGGAAAGAGACCTGCGCCCCCTGGCCCGGAAAAAGCAAAGGAGGGGAAGGCGGTTCTCCACTACACCATCAGTGACGGGCTGTACGGCTCCTTCGACTGTGTGAGTCATGACGGCGGGAGGTACCTGCGGCCCCACACGGCCAAACACAGGGATGGCTGCCCCCTGCAGGCCTGCATAGTGTGGGGGCCCACCTGTTCCTCTCTGGACCAGATTGGCAGGGACTGGCTGCTGCCCGAGCTGGAGGTGGGCGACTGGCTACTGTTTCCTGACCATGGGGCTTACTCCATTTGCCTGGGAACCAACTTCAATGGGTTCCCCCTTCCACAGGTCTACTACACCGTATCCAGAGCTGTGTGGTGA

Function

GO:

id name namespace
GO:0042462 eye photoreceptor cell development biological_process

KEGG:

id description
K01581 E4.1.1.17, ODC1, speC, speF; ornithine decarboxylase

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00011116 True 1227 mRNA 0.61 8 11833844 11839029

Neighbor

gene id symbol gene type direction distance location
AMCG00011111 NA coding upstream 191617 11638002 ~ 11642227 (+)
AMCG00011108 NA coding upstream 246638 11574540 ~ 11587206 (+)
AMCG00011105 kcnq4 coding upstream 280866 11542988 ~ 11552978 (+)
AMCG00011107 NA coding upstream 303115 11527210 ~ 11530729 (+)
AMCG00011109 kcnq4 coding upstream 333574 11499565 ~ 11500270 (+)
AMCG00011122 NA coding downstream 104570 11943599 ~ 11946001 (+)
AMCG00011121 eef1a1l2,LOC107589444,LOC107706209,LOC105892153,LOC105027913 coding downstream 123369 11962398 ~ 11966995 (+)
AMCG00011120 ppt1,LOC107696568,LOC107591677,LOC107697049,LOC107706207,LOC107589449 coding downstream 147833 11986862 ~ 11988912 (+)
AMCG00011133 NA coding downstream 195268 12034297 ~ 12038373 (+)
AMCG00011134 NA coding downstream 206006 12045035 ~ 12050580 (+)
G104326 NA non-coding upstream 239850 11532920 ~ 11593994 (+)
G104310 NA non-coding upstream 413778 11418666 ~ 11420066 (+)
G104307 col9a2 non-coding upstream 456759 11372554 ~ 11377085 (+)
G104271 NA non-coding upstream 1109954 10723550 ~ 10723890 (+)
G104255 NA non-coding upstream 1216648 10555729 ~ 10617196 (+)
G104443 NA non-coding downstream 5381 11844410 ~ 11844623 (+)
G104444 NA non-coding downstream 5657 11844686 ~ 11845805 (+)
G104445 NA non-coding downstream 6959 11845988 ~ 11846253 (+)
G104479 NA non-coding downstream 75465 11914494 ~ 11917031 (+)
G104480 NA non-coding downstream 78659 11917688 ~ 11918147 (+)
AMCG00011115 NA other upstream 23022 11808846 ~ 11810822 (+)
G104382 NA other upstream 162504 11666198 ~ 11671340 (+)
AMCG00011110 zn706,LOC103364770,LOC104931588,LOC101168967,LOC102235987,LOC101064701,LOC103393878 other upstream 182823 11644017 ~ 11651021 (+)
G104273 NA other upstream 1014421 10818688 ~ 10819423 (+)
AMCG00011089 csmd2 other upstream 1561981 10203617 ~ 10271863 (+)
G104435 NA other downstream 3100 11842129 ~ 11844089 (+)
G104550 NA other downstream 227465 12066494 ~ 12067337 (+)
AMCG00011141 LOC567622,LOC108413244,LOC103367052,LOC101466533,LOC107379323 other downstream 228422 12067451 ~ 12140465 (+)
G104694 NA other downstream 686331 12525360 ~ 12527031 (+)
G104719 NA other downstream 771100 12610129 ~ 12619055 (+)

Expression


Co-expression Network