AMCG00011121 (eef1a1l2,LOC107589444,LOC107706209,LOC105892153,LOC105027913)


Basic Information

Item Value
gene id AMCG00011121
gene name eef1a1l2,LOC107589444,LOC107706209,LOC105892153,LOC105027913
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 11962398 ~ 11966995 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00011121
ATGGGGAAGGAAAAGATCCACATTAACATCGTGGTCATCGGCCACGTCGACTCCGGCAAGTCCACCACCACCGGCCATCTCATCTACAAATGCGGCGGCATCGACAAGAGGACCATCGAGAAGTTCGAGAAGGAGGCGGCCGAGATGGGCAAGGGCTCCTTCAAGTACGCCTGGGTGCTGGACAAGCTGAAGGCCGAACGTGAGCGTGGTATCACCATCGACATCTCTCTGTGGAAGTTCGAGACCGCAAAGTACTACGTCACCATCATCGACGCTCCCGGCCACAGAGATTTCATCAAGAACATGATCACTGGCACCTCACAGGctgactgtgctgtgctgattGTGGCTGGAGGCGTGGGTGAGTTTGAGGCTGGCATCTCCAAAAACGGCCAGACCCGAGAGCACGCCCTGCTGGCCTTCACCCTGGGAGTGAAGCAGCTCATCGTGGGAGTCAACAAGATGGACTCCACCGAGCCCCCCTACAGCCAGAAGCGTTATGAGGAGATCACCAAGGAAGTCAGCGCCTACATCAAGAAGATCGGCTACAACCCTACCACCGTGGCTTTCGTGCCCATCTCTGGATGGCATGGAGACAACATGCTGGAGCCCAGCAGCAATATGCCTTGGTTCAAGGGATGGAAGGTGGAACGTAAGGAGGGCAATGCCAATGGTACCACCCTCCTGGAGGCTCTGGACTCCATCCTCCCCCCCTCCCGCCCAACAGACAAGCCCCTGCGTCTGCCCCTGCAGGACGTCTACAAGATAGGAGGTATTGGCACAGTACCCGTGGGCCGTGTTGAAACTGGCACCCTGAAGGCTGGTATGGTTGTGACCTTTGCCCCCGCCAACGTGACCACTGAGGTGAAGTCTGTGGAGATGCACCACGAGACCCTGGTCGAGGCCCTGCCTGGGGACAACGTCGGCTTCAACGTCAAGAACGTGTCAGTCAAGGACATCCGCCGTGGCAACGTGGCTGGAGACAGCAAGAACGACCCCCCAATGGAGGCCGACCACTTCACTGCCCAGGTTATCATCCTGAACCACCCTGGACAGATCAGTGCTGGCTATGCGCCCGTGCTGGATTGCCACACCGCCCACATTGCCTGCAAGTTCAGTGAGCTGAAGGAGAAGATTGACCGCCAACGGCGGTCAATCTTCTCCTTCAGCTCACTGAACTTGCAGGCGATGTGGGCGGTGTGGCAATCCAGCACAGGTGCATAG

Function

symbol description
eef1a1l2 Predicted to enable GTP binding activity; GTPase activity; and translation elongation factor activity. Predicted to act upstream of or within translational elongation.

NR:

description
PREDICTED: elongation factor 1-alpha, somatic form-like

GO:

id name namespace
GO:0006414 translational elongation biological_process
GO:0005737 cytoplasm cellular_component
GO:0003924 GTPase activity molecular_function
GO:0005525 GTP binding molecular_function
GO:0003746 translation elongation factor activity molecular_function

KEGG:

id description
K00956 cysN; sulfate adenylyltransferase subunit 1

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00011121 True 1224 mRNA 0.58 7 11962398 11966995

Neighbor

gene id symbol gene type direction distance location
AMCG00011122 NA coding upstream 16397 11943599 ~ 11946001 (+)
AMCG00011116 NA coding upstream 123369 11833844 ~ 11839029 (+)
AMCG00011111 NA coding upstream 320171 11638002 ~ 11642227 (+)
AMCG00011108 NA coding upstream 375192 11574540 ~ 11587206 (+)
AMCG00011105 kcnq4 coding upstream 409420 11542988 ~ 11552978 (+)
AMCG00011120 ppt1,LOC107696568,LOC107591677,LOC107697049,LOC107706207,LOC107589449 coding downstream 19867 11986862 ~ 11988912 (+)
AMCG00011133 NA coding downstream 67302 12034297 ~ 12038373 (+)
AMCG00011134 NA coding downstream 78040 12045035 ~ 12050580 (+)
AMCG00011142 NA coding downstream 176867 12143862 ~ 12148439 (+)
AMCG00011146 NA coding downstream 317877 12284872 ~ 12300928 (+)
G104477 NA non-coding upstream 12686 11948240 ~ 11949712 (+)
G104489 NA non-coding upstream 30112 11930208 ~ 11932286 (+)
G104488 NA non-coding upstream 32384 11929213 ~ 11930014 (+)
G104483 NA non-coding upstream 41201 11919874 ~ 11921197 (+)
G104480 NA non-coding upstream 44251 11917688 ~ 11918147 (+)
G104512 NA non-coding downstream 10241 11977236 ~ 11978365 (+)
G104596 NA non-coding downstream 184370 12151365 ~ 12151633 (+)
G104603 NA non-coding downstream 283264 12250259 ~ 12254820 (+)
G104609 NA non-coding downstream 292617 12259612 ~ 12259861 (+)
G104627 NA non-coding downstream 366333 12333328 ~ 12334214 (+)
G104435 NA other upstream 118309 11842129 ~ 11844089 (+)
AMCG00011115 NA other upstream 151576 11808846 ~ 11810822 (+)
G104382 NA other upstream 291058 11666198 ~ 11671340 (+)
AMCG00011110 zn706,LOC103364770,LOC104931588,LOC101168967,LOC102235987,LOC101064701,LOC103393878 other upstream 311377 11644017 ~ 11651021 (+)
G104273 NA other upstream 1142975 10818688 ~ 10819423 (+)
G104550 NA other downstream 99499 12066494 ~ 12067337 (+)
AMCG00011141 LOC567622,LOC108413244,LOC103367052,LOC101466533,LOC107379323 other downstream 100456 12067451 ~ 12140465 (+)
G104694 NA other downstream 558365 12525360 ~ 12527031 (+)
G104719 NA other downstream 643134 12610129 ~ 12619055 (+)
AMCG00011163 reep2,LOC107557670,LOC107588406 other downstream 703381 12670376 ~ 12679429 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000049_01543239_01547533 EEF1A1B, EF1A1, EEF1A1A, EEF1A1.L, EEF1A1 coding CI01000049 null 1543102 ~ 1548019 (+)