AMCG00011122


Basic Information

Item Value
gene id AMCG00011122
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 11943599 ~ 11946001 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00011122
atgGCCCCTAAGAGAAAGGTAGCTCGTCAGAAGAAGCTGACAGTGGAGCCGGGCAcggggggggaggagggggtggtggtGCTGGGGGGCAATGGCGACGAGAAGATCGAGGAGGCGGCGCTGGACATTGAGCAGCTGAACCAGCTGAACGGGCTGCTGCCAGACCCGGGCTTAGGGCTGGCGTCTGGGCTGGGCCGTGAGATGAGCCGTCCAGAGCACAGCGCTGCCATGCTGGAGGAGCTGAGCCGCATGCGGCAGGAGCGCTTCCTCACCGACCTGGAGCTGGCCACCAAGACCAAGAGCTTTGACGTGCACCGGCTGGTGGTGGCATCCTGCAGCCAGTACCTCCGCCAGCTGCTGGAGAAGGACCCGGAGCTGCGGCGGGTGGAGCTGCCGTCCCTCTCGCCCCTTGGCCTGGCCACTGTCATCACCTTCGCCTACCTGGGCCGCGCACACCTGTCACTGTACACCATCGGCTGCACAGTGGCGGCTGCCAAGCTCCTGCAGGTGCCGCAGCTGCTGCAGATGTGCGTGGACTTCCTGCTGCAGGAGCTGAGTCTGCCCACCTGCGTGTATGTGTGGAACATGGGCGGGGCCTACGGGCTGGCGGCTGTGCGCGAAGCAGCACGTTCCTTCCTGCTGCGGCATTTTGCAGAGTTCTCCCGCACCCCACCCTTCACCCAGCTCACCCTGGAGCAGATCTGCACCTTCCTGCAGGATGACCGGTTGCAGCTGCCCTCTGAGGTCACCGCCTTCCAGATCGCTCTCCGCTGGCTGGAATTCGACGAGCGGCGGACGCGCCATGCTGGGGAGCTGCTGGCCCTGGTGCGGCTGGAGACCATCCCAGCAGCTCAGCTGGTCAGTGAGGTGCAGGCCGAGCCGCGCATGATGCTGGACCCAGTCTGCCATCGCTTGCTGGTGGACGCCATGAACTACCACCTACTTCCACACCAGCAGAATGCACTACAGGGCCCTCGCACTCGTGTCCGCGCCGGCCGCAGTGTGCTGGCCGTGGTGGGGGGCCGGCCCTCGCTGACCGAGCGCGCACTGAGCCGGGAGGTCATGTGCTGTGAGGTGGGCAGAGTTGTGGAGGAAGGGGACCCGCCCCCGGCCTGGCGCGCCCTCACCCAGCTTCCTGCCAAGAGTTTCAACCAGAGTGTGGCGGCCATGGATGGCTTCCTGTACGTGGCTGGGGGGGAGGACCAGAACGACGCACGCAACCAGGCCAAGCACGCTGTCAACACTTTCTGCAGGTATGACCCTCGCTTCAACACCTGGCTGCACCTGGCTGGGATGAGTCAGCGCCGCACGCACTTCTGCCTGGCAGCCAGCGAAGGGCGTCTGTATGCTGTTGGGGGGCGCAGCGCAGACGGTGTGCTGTCCACAGTGGAGTGCTACATACCATCCGCCAACGCCTGGCAGCCACGTGCCACCATGCCTATATCCCGCTGCTGCCACGCAGCCACCACGCTGCCCTCGGGCTCCCTGCTGGTGACAGGCGGCTACAGCGGGGGGGCATACTCTAGATCTGTCCTCAGCTACAGCCCTGCTGCTGATGCCTGGGAAGACTGCCCCAGCCTGGCCACGCCCCGGGGCTGGCACTGTGCTGCCCTGCTGGGGGGGAGGGTGTACGTAGTAGGGGGCAGTCAGTTGGGATCCCGGGGGGAGCGGGTGGACGTGCTGGAAGTGGAGGTGTATTGTCCGGAGAGCGCGCAGTGGTCCCACGCCGCCCCCCTGTCCCTGGGGGTCAGCACGGCTGGCTTGGCTCCGCTGGGGGGGAGGTTGTTcctggtgggggggtggaatgAGGCTGAGAAGAAGTACCAGTCAGCCGTGCAGCGATACGACCCTGACAGTGACAGCTGGGGCACTGGGGGGCAGCTGCCTGAGCCCACCGTGGGCGTCTCCTGCTGCGCCCTCACCCTGCCCCCCCAGCCGCCACCCCCTGCACCGCATAAGACCGGAGAgcaagaggaggagagagatgtCGGGAACAACCAGGACAAGGCTGTGCCACTCAGGGAGGAGTAG

Function

GO:

id name namespace
GO:0009123 nucleoside monophosphate metabolic process biological_process
GO:0009124 nucleoside monophosphate biosynthetic process biological_process
GO:0009126 purine nucleoside monophosphate metabolic process biological_process
GO:0009127 purine nucleoside monophosphate biosynthetic process biological_process
GO:0009156 ribonucleoside monophosphate biosynthetic process biological_process
GO:0009161 ribonucleoside monophosphate metabolic process biological_process
GO:0009167 purine ribonucleoside monophosphate metabolic process biological_process
GO:0009168 purine ribonucleoside monophosphate biosynthetic process biological_process
GO:1990351 transporter complex cellular_component
GO:0034702 ion channel complex cellular_component
GO:0034703 cation channel complex cellular_component
GO:0034704 calcium channel complex cellular_component
GO:0005891 voltage-gated calcium channel complex cellular_component
GO:1902495 transmembrane transporter complex cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00011122 True 2031 mRNA 0.66 3 11943599 11946001

Neighbor

gene id symbol gene type direction distance location
AMCG00011116 NA coding upstream 104570 11833844 ~ 11839029 (+)
AMCG00011111 NA coding upstream 301372 11638002 ~ 11642227 (+)
AMCG00011108 NA coding upstream 356393 11574540 ~ 11587206 (+)
AMCG00011105 kcnq4 coding upstream 390621 11542988 ~ 11552978 (+)
AMCG00011107 NA coding upstream 412870 11527210 ~ 11530729 (+)
AMCG00011121 eef1a1l2,LOC107589444,LOC107706209,LOC105892153,LOC105027913 coding downstream 16397 11962398 ~ 11966995 (+)
AMCG00011120 ppt1,LOC107696568,LOC107591677,LOC107697049,LOC107706207,LOC107589449 coding downstream 40861 11986862 ~ 11988912 (+)
AMCG00011133 NA coding downstream 88296 12034297 ~ 12038373 (+)
AMCG00011134 NA coding downstream 99034 12045035 ~ 12050580 (+)
AMCG00011142 NA coding downstream 197861 12143862 ~ 12148439 (+)
G104489 NA non-coding upstream 11313 11930208 ~ 11932286 (+)
G104488 NA non-coding upstream 13585 11929213 ~ 11930014 (+)
G104483 NA non-coding upstream 22402 11919874 ~ 11921197 (+)
G104480 NA non-coding upstream 25452 11917688 ~ 11918147 (+)
G104479 NA non-coding upstream 26568 11914494 ~ 11917031 (+)
G104477 NA non-coding downstream 2239 11948240 ~ 11949712 (+)
G104512 NA non-coding downstream 31235 11977236 ~ 11978365 (+)
G104596 NA non-coding downstream 205364 12151365 ~ 12151633 (+)
G104603 NA non-coding downstream 304258 12250259 ~ 12254820 (+)
G104609 NA non-coding downstream 313611 12259612 ~ 12259861 (+)
G104435 NA other upstream 99510 11842129 ~ 11844089 (+)
AMCG00011115 NA other upstream 132777 11808846 ~ 11810822 (+)
G104382 NA other upstream 272259 11666198 ~ 11671340 (+)
AMCG00011110 zn706,LOC103364770,LOC104931588,LOC101168967,LOC102235987,LOC101064701,LOC103393878 other upstream 292578 11644017 ~ 11651021 (+)
G104273 NA other upstream 1124176 10818688 ~ 10819423 (+)
G104550 NA other downstream 120493 12066494 ~ 12067337 (+)
AMCG00011141 LOC567622,LOC108413244,LOC103367052,LOC101466533,LOC107379323 other downstream 121450 12067451 ~ 12140465 (+)
G104694 NA other downstream 579359 12525360 ~ 12527031 (+)
G104719 NA other downstream 664128 12610129 ~ 12619055 (+)
AMCG00011163 reep2,LOC107557670,LOC107588406 other downstream 724375 12670376 ~ 12679429 (+)

Expression


Co-expression Network