AMCG00011123 (sfpq,LOC107558579,LOC107706594)


Basic Information

Item Value
gene id AMCG00011123
gene name sfpq,LOC107558579,LOC107706594
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 11907461 ~ 11917021 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00011123
GCTTATAAAAGGCCATCACAAAGAGAGAAAGTGCTCATTTCGCCgccattttgttctttttggaGAGGTATTCTGGTCTGTTAGTGACGCATTTAATtgactttttaatatttgtttagcACTCACTTCTTGAGTTGTTTGACGGTGGCTACgcatttactgttttttgttttttccttttgagttaatcaaataaatacaataatgtccCGGGATCGGTTCAGAAATCGCGGCGGGTTCCAGCGCAGAGGCGGCAGTGGAGCAGTTCGGGGCGGAATGGGGGGAAACCCGAACTTCAGGAATCACAGCCAGCATCCCTTCCAGAACCGGCCTCCGCAGCCGCCGACATTAAACCAGGGCCCAGTGCCCAAACCAGGCCCACCTCCGAGCCCGATCACCAGCCCCCAGAAGCCATTGCCTCCCCACGCGAACCAGACACCGCCGCCAAATCAGCCCGTCCAGCCCGTCCAGCAGTCGCCTAATGCAAACAACAAGACTACTCCGACACCCCCGCCGCAGGCCCCGGTCAGCCAGCCTCGCCTGCAGTCCCCGCCGCCCAAGACCATCCCCCCGGCGGCCCAGAATCAACTACCAAACAAGAATCAACAGAAACCCGGCCAGGGCAACGAACACAAGCCGCCGGTGCCCCCGAACAACAAGCCTCCTCAGCAACTGCAACCGCCGAAGAAACAGGATGTTTCCTCCGAGCAGCCTCAGGAGCTGAAGGCCACCTTGTCCCTGCTGCGCAGACCAGGCGAGAAGACTTACACCCAGCGCTGCCGGCTCTTCATCGGCAACCTGCCCGGCGACATAAGCGATGACGAGTTCAAGAGGCTGTTTGCCAAGTATGGGGAGCCCAGCGAGATCTTCATCAACAAGAACAAGGGCTTTGGCTTCATCCGCCTGGAGTCACGGGCACTGGCAGAGATTGCCAAGGCTGAGCTGGATGATGTGCCGATGAAGGGGCGCCAGCTGCGCGTGCGTTTCGCCACTCACTCGGCTGCACTGTCTGTGCGCAACCTGTCTCCTTTCGTGTCCAATGagctgctggaggaggcctTCTCACAGTTCGGCCAGGTGGAGCGTGCCGTGGTGATCGTGGACGACCGCGGCCGCTCCACGGGCAAAGGCATTGTGGAGTTTGCCTCTAAGCCTGCTGCCCGCAAAGCCCTGGAGCGCTGCACTGAGGGCGTGTTCTTGCTCACAACGTCCCCACGCCCTGTGATTGTGGAGCCCCTAGAGCAGTTTGATGATGAGGATGGGCTGCCGGAGAAGCTGGCTCAGAAGAACCCCATGTATCAGAAGGAGAGGGAACAGCCCCCACGTTTTGCCCACCCTGGCTCCTTCGAGTTTGAGTACTCGCAGCGCTGGAAGTCCCTGGATGACATGGAGaagcagcagcggcagcaggTTGAGAAGAATATCCGTGAGGCGCGCGATAAgctggagggagagatggaggacGCCTACCATGAGCACCAGGCCAACCTGCTGCGACAGGATCTGCTGAGGCGCCAGGAGGAGCTGCGTCGAATGGAGGAGCTGCACAGCCAGGAGATGCAGAAACGCAAAGAGATGCAGCTCAGGCAGGAGGAGGAACGACGGCGCAGGGAGGAGGAGATGATGCGGCAGCGTGAGATGGAGGAGCAGATGCGCCGGCAGCGTGAGGAGTCCTACAGGATGGGCGGCTACATGGACAGTagggagagggagatgcgGCTAAGCGGTGGGGGCTCTATGGGCATGTCAGACATGCCCTTTGGTTCACCCAACCAGAAGTTCCCCATGGGAGGAATGGGCTTTGATGGCCACCAGGGCATGGGTGCACCTGCAGCTGGGGGCATGGGTGGTGCCATGATGCCTGCTGACATGCGCAATGAGCGTTTCCCACAGGGTGGCCCTGGGGGCCCCAGGGGCATGGGCCCCGGTGGCATGGGCCCTGGTAACCCTGGCTTCGGCCGTGGGCGTGAGGAGTTCGATGGGCCAGCCAAGAAGCCCAGATTCTAATGCCCCTTACCGACCGCTGGAGACTTGAGAAACCAGCGCTTTGTGTAGATCCTGCTCCCAGCGCCCCACCTAGAGTCACAATGTTGTATTTGAGTTTAAAGTGTTCCTGCATTTTAGTGAGACTTTTTATGGcaaccttgattttttttttttttttttttttttttttttttttttttt

Function

symbol description
sfpq Predicted to enable RNA binding activity. Acts upstream of or within central nervous system development and negative regulation of axon regeneration. Located in neuron projection and nucleus. Is expressed in brain; eye; gut; heart; and muscle cell. Orthologous to human SFPQ (splicing factor proline and glutamine rich).

NR:

description
PREDICTED: splicing factor, proline- and glutamine-rich isoform X2

GO:

id name namespace
GO:0007420 brain development biological_process
GO:0003676 nucleic acid binding molecular_function
GO:0000166 nucleotide binding molecular_function

KEGG:

id description
K13219 SFPQ, PSF; splicing factor, proline- and glutamine-rich

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00011123 True 2187 mRNA 0.57 10 11907461 11917021

Neighbor

gene id symbol gene type direction distance location
AMCG00011130 NA coding downstream 8213 11891687 ~ 11899248 (-)
AMCG00011124 NA coding downstream 16363 11872604 ~ 11891098 (-)
AMCG00011117 ak2,LOC106570014 coding downstream 47461 11855231 ~ 11860000 (-)
AMCG00011118 NA coding downstream 53564 11839260 ~ 11853897 (-)
AMCG00011119 NA coding downstream 101704 11800761 ~ 11805757 (-)
AMCG00011126 lypla2 coding upstream 1683 11918704 ~ 11924459 (-)
AMCG00011132 NA coding upstream 10079 11927100 ~ 11929873 (-)
AMCG00011127 NA coding upstream 13375 11930396 ~ 11937533 (-)
AMCG00011131 rpl11,LOC106570028,LOC107589447,LOC107591640 coding upstream 31219 11948240 ~ 11951000 (-)
AMCG00011128 NA coding upstream 35095 11952116 ~ 11958308 (-)
G104449 NA non-coding downstream 210402 11663592 ~ 11697059 (-)
G104376 NA non-coding downstream 250628 11649005 ~ 11656833 (-)
G104342 NA non-coding downstream 313119 11587058 ~ 11594342 (-)
G104341 NA non-coding downstream 313842 11511223 ~ 11593619 (-)
G104319 NA non-coding downstream 481236 11420749 ~ 11426225 (-)
G104513 NA non-coding upstream 60330 11977351 ~ 11978288 (-)
G104545 NA non-coding upstream 122148 12039169 ~ 12039376 (-)
G104568 NA non-coding upstream 159707 12076728 ~ 12144122 (-)
G104591 NA non-coding upstream 218947 12135968 ~ 12142015 (-)
G104598 NA non-coding upstream 239421 12156442 ~ 12156731 (-)
AMCG00011086 NA other downstream 2163676 9741133 ~ 9743785 (-)
AMCG00011084 dlgap3,LOC106933674,LOC106958363 other downstream 2288182 9601377 ~ 9619279 (-)
AMCG00011058 srrm1,LOC107583602,LOC107721297,LOC106579139 other downstream 2671233 9222268 ~ 9236228 (-)
AMCG00011051 NA other downstream 3043410 8819551 ~ 8864051 (-)
G103832 NA other downstream 3880430 7938137 ~ 8027031 (-)
AMCG00011125 eef1a1l2,LOC107589444,LOC107706209,LOC107654701,LOC100136525,LOC105027913 other upstream 42217 11959238 ~ 11971002 (-)
AMCG00011140 NA other upstream 73808 11990829 ~ 11997786 (-)
AMCG00011135 NA other upstream 149474 12066495 ~ 12069079 (-)
G104629 LOC100194717,LOC107660902,LOC107754487,LOC107655673 other upstream 409076 12326097 ~ 12328282 (-)
AMCG00011152 kcnip1 other upstream 510972 12427993 ~ 12457327 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
rainbow trout (Oncorhynchus mykiss) G2321733 LOC106570021 non-coding NC_050572.1 CM025859.1 35425707 ~ 35436132 (+)