AMCG00011125 (eef1a1l2,LOC107589444,LOC107706209,LOC107654701,LOC100136525,LOC105027913)


Basic Information

Item Value
gene id AMCG00011125
gene name eef1a1l2,LOC107589444,LOC107706209,LOC107654701,LOC100136525,LOC105027913
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 11959238 ~ 11971002 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00011125
atgggaaaagaaaagatcCACATTAACATCGTGGTCATCGGCCACGTCGACTCCGGCAAGTCCACCACCACCGGCCATCTCATCTACAAATGCGGCGGCATCGACAAGAGGACCATCGAGAAGTTCGAGAAGGAGGCGGCCGAGGTGAGTCTCAGCCCGGCGGACTCCGCTCCTCTCCTCTCGCTCGCCTCCTCCATTGCGAGGCGGTGCGGTGTGACTCACGGCTGTAAAGATGGCGGCCGAGGCATGGGCAAGGGCTCCTTCAAGTACGCCTGGGTGCTGGACAAACTGAAGGCCGAGCGTGAGCGTGGTATCACCATCGACATCTCCCTGTGGAAGTTCGAGACTGCGAAGTACTACGTCACCATCATTGATGCTCCTGGCCACAGAGACTTCATCAAGAACATGATCACTGGCACCTCACAGGctgactgtgctgtgctgattGTGGCTGGAGGCGTGGGTGAGTTTGAGGCTGGCATCTCCAAAAACGGCCAGACCCGAGAGCACGCCCTGCTGGCCTTCACCCTGGGAGTGAAGCAGCTCATCGTGGGAGTCAACAAGATGGACTCCACCGAGCCCCCCTACAGCCAGAAGCGTTACGAGGAGATCACCAAGGAAGTCAGCGCCTACATCAAGAAGATCGGCTACAACCCTGCCACCGTGGCCTTCGTGCCCATCTCTGGATGGCATGGAGACAACATGCTGGAGCCCAGCACCAATATGCCTTGGTTCAAGGGATGGAAGGTGGAGCGCAAGGAGGGCAATGCCAATGGCACCACCCTCCTGGAGGCTCTGGACTCCATCATCCCCCCCTCCCGCCCCACAGACAAGCCCCTGCGTCTGCCCCTGCAGGATGTCTACAAGATCGGAGGTATTGGCACAGTACCCGTGGGCCGTGTTGAAACTGGCACCCTGAAGGCCGGTATGGTGGTGACCTTTGCCCCCGCCAACGTGACCACTGAGGTGAAGTCTGTAGAGATGCACCACGAGACCCTGGTCGAAGCTGTTCCTGGGGACAACGTCGGCTTCAACGTCAAGAACGTGTCAGTCAAGGACATCCGCCGTGGCAACGTGGCTGGAGACAGCAAGAACGACCCCCCAATGGAGGCTGGCACCTTCACTGCCCAGGTGAGCAACTGGATGAGCAGGACCGGACTGGGGTGTCAAGCTTCAGATGGTGCAGTCCTGGATCTCCCTTGGTCTGACCTTCACTTTCACTGCCTTTTGTGA
>TU130673
ggggggtgtCGCTCCCAGTATAAAACCCCCGACCCGCAGCCCTTGCTCCTTCTCTTTCCGTTACCTGGCCACGGGGTAGTAGCAGCAGCCGAACGGACTCCTCACCCGaaaCTTAACGCAACAACcatgggaaaagaaaagatcCACATTAACATCGTGGTCATCGGCCACGTCGACTCCGGCAAGTCCACCACCACCGGCCATCTCATCTACAAATGCGGCGGCATCGACAAGAGGACCATCGAGAAGTTCGAGAAGGAGGCGGCCGAGATGGCCGGTGGTGGTGGACTTGCCGGAGTCGACGTGGCCGATGACCACGATGTTAATGTGGATCTTTTCCTTCCCCATTGCGCTTAGTTATAGtttctaattcaattaaaaataaacgacgctacagtgaaaacatgtatatataatttacacacagaaaatgtgccaaacagcctttttttattattccagtATAAAATACAGCTTACGCACTAAAAGCGTACCCTTAAACCGCgctcccccctctccccagtCCTCCATGTTGAGCCGGCTCCAGTCCCCAGCCTTCCTCCATGTTGTTAGCCAGCCCCATTGATCATACAGTGCTGACTCAGCGCCAACCGCATGGCCACGGCCCAGAAGCGGCCTCCCCTCGCCGCCGCAGTCCCCGCACCCCCCCGCTCAGCAGCGTCGCTGGCCGGCTGCGGGGGCTACATTAGCCCAGGAGTCTGCGCACTGGCAGCAGCGCAGACAATAGGTAGTACCGAAGCACCCCCCTCCGCCATTGCTGGGCCCGAGCTTCCGATTACATTATCCCCAACATCTGCAACCGACACTAACCCAAACTGGGCTCTCCAACCCGCCCCGCCGGTCCCGCGGAGCCGAGCTCGTTACCGGGGAGCGGCTTGGGTTCGATGACCCGGATGGGTTCGGATTGTGTGCACCGGTGAGCAGACTGGGAAGGGCGGGGGGCGAGCGctaggttttttttatttaaaaaataaaaaaaataaacccttaTCAATAGCGGACAAAGTACGCAAGGACACCCTACCCATACAATTCGGGGGAAATCAAATTTGACATCCTATCTCCGTGATACGGAGCCTCGGCCCCCGGCGTCAGTGCCGCTTCAGGAAACGGTTTAGTCAAGTCTCGAGTAAGGCCCCAGCCTGCTAGTGGTTTCCTCAAAATGGCTCCTTGCAGAAAAATGGGAACACTGAAATGTACATAGTGTGGGCTGCCAGTGAGTGAGCCACCTGACTCCCCAGCTCTGCAGACGAACTAAAGGATCtacattacatacaaaataaattcaaaccCGCACGCTTTTATAAAAAGCCCATACCTGCAGTTTGCGGTAGTGCACAGCGACTGTCCCTGGGTCAGAGCCGGAGATAAAAAGGACCGAATCCGGCCCCGCACCGCATTTTATACCGGCACCGTAAGGGGCGTGGTTACATGTCAGTTAGAGCAAGGCGGGCTGACTAGGAACCAACACCGATCTCCATTGGCTGCAGCGGGACAGACCAATCGCTCTCATTGGTCGCACAGATACAGTGGATTCTCAACGCCAGACGTCAGGCTGCGGCAGCCCAGCAGtcagaaaaatgacaaacacGTGGTTGACAAAAAGGTTAGCGTGGAGGGGAGATTTTAACCCTGAAATCCTGCCATGTAGACATGGTCTGTGATCTGGGAGTCTACATCTAAAACAGAGCAGCCCAACCCCTACAACGGAGGGAAGAAATTGAGAATCCACActgcaattacaaaaaaattcCAACAGCCCCACCCAATTCCTAAGCATCTAAAAATCACACTGGGACCGGCTGACTAACATCTTTTGTAACAAAACACCTTCAGGTAAGAAAAGAGCCAGCACTGGATTGATGGGTCAAGAAATTCAAAGACCTTTATTTGATTACAGCAGCTTCATCCAATCCAATAAAGTGGCCCCACAATTAGTTGCAGCTTTAGAAACCATTAACTGAAATTAACCAAAACTGAAAGGCACCGCAACTTTAACATTTCTGTGAAGCCACATAAATACCGATAACGTGGGTTAGGTTTTTGTTCCTTTCCTGCGAAAACTTTTGCGATGGGTTTTAATGAGCATTAGCCAGTCCTTAAGGACTGGCTAATGCTCATTAAAACCCATCGCAAAAGTTTTCGCAGGAAAAGAAAGTTCAGAGATAGTGAAATTTTaggctaaattaaaataattaaatatctatatcaaaaacaaaacaaagtgccaTTGCGTTCCATAATTGCCAACACTGAAAGGGGGACAAAGAAATAATAACGAGAAATTGAGAAACTGATTGTGGGGCTGCTGTTtgggtgttcttttcttttttttcttttttttttttaacaagaacttggaaattaataaacaatgagCACACTTCCtgacttgtgtttttattttaattacgaGTGTTTCTGGGTTTTGGGTAGGGTTGTTCAGAAGCTGTATTGGAAAGCTGGTTTTCAAATGGCAGG

Function

symbol description
eef1a1l2 Predicted to enable GTP binding activity; GTPase activity; and translation elongation factor activity. Predicted to act upstream of or within translational elongation.

GO:

id name namespace
GO:0006414 translational elongation biological_process
GO:0005737 cytoplasm cellular_component
GO:0003924 GTPase activity molecular_function
GO:0005525 GTP binding molecular_function
GO:0003746 translation elongation factor activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00011125 False 1233 mRNA 0.59 5 11967369 11970235
TU130673 True 2502 lncRNA 0.49 4 11959238 11971002

Neighbor

gene id symbol gene type direction distance location
AMCG00011128 NA coding downstream 930 11952116 ~ 11958308 (-)
AMCG00011131 rpl11,LOC106570028,LOC107589447,LOC107591640 coding downstream 8238 11948240 ~ 11951000 (-)
AMCG00011127 NA coding downstream 21705 11930396 ~ 11937533 (-)
AMCG00011132 NA coding downstream 29365 11927100 ~ 11929873 (-)
AMCG00011126 lypla2 coding downstream 34779 11918704 ~ 11924459 (-)
AMCG00011129 NA coding upstream 7951 11978953 ~ 11984808 (-)
AMCG00011138 NA coding upstream 33094 12004096 ~ 12008953 (-)
AMCG00011137 LOC107589451,LOC104962793 coding upstream 44151 12015153 ~ 12033399 (-)
AMCG00011139 psmb2,LOC107591978,LOC107592948,LOC107688376 coding upstream 82636 12053638 ~ 12059625 (-)
AMCG00011136 NA coding upstream 100665 12071667 ~ 12085428 (-)
G104449 NA non-coding downstream 262179 11663592 ~ 11697059 (-)
G104376 NA non-coding downstream 302405 11649005 ~ 11656833 (-)
G104342 NA non-coding downstream 364896 11587058 ~ 11594342 (-)
G104341 NA non-coding downstream 365619 11511223 ~ 11593619 (-)
G104319 NA non-coding downstream 533013 11420749 ~ 11426225 (-)
G104513 NA non-coding upstream 6349 11977351 ~ 11978288 (-)
G104545 NA non-coding upstream 68167 12039169 ~ 12039376 (-)
G104568 NA non-coding upstream 105726 12076728 ~ 12144122 (-)
G104591 NA non-coding upstream 164966 12135968 ~ 12142015 (-)
G104598 NA non-coding upstream 185440 12156442 ~ 12156731 (-)
AMCG00011086 NA other downstream 2215453 9741133 ~ 9743785 (-)
AMCG00011084 dlgap3,LOC106933674,LOC106958363 other downstream 2339959 9601377 ~ 9619279 (-)
AMCG00011058 srrm1,LOC107583602,LOC107721297,LOC106579139 other downstream 2723010 9222268 ~ 9236228 (-)
AMCG00011051 NA other downstream 3095187 8819551 ~ 8864051 (-)
G103832 NA other downstream 3932207 7938137 ~ 8027031 (-)
AMCG00011140 NA other upstream 19827 11990829 ~ 11997786 (-)
AMCG00011135 NA other upstream 95493 12066495 ~ 12069079 (-)
G104629 LOC100194717,LOC107660902,LOC107754487,LOC107655673 other upstream 355095 12326097 ~ 12328282 (-)
AMCG00011152 kcnip1 other upstream 456991 12427993 ~ 12457327 (-)
G104715 NA other upstream 577287 12548289 ~ 12548993 (-)

Expression


Co-expression Network