XLOC_006066 (ppifa)


Basic Information

Item Value
gene id XLOC_006066
gene name ppifa
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007124.7
NCBI id CM002897.2
chromosome length 52186027
location 30572172 ~ 30575799 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00011979
AGAACACGTCACGTGTTTTTGTGTACAGTTGACAGCTCGATGGTGAACGCGGTTATAACCTTGAACACTGATTATTTTCTTTCATGTATTTGTTGATGGGTTTTCAACTCTACAGCAAGAATGTTACAGATGAAAAGCCGTTTGAAATATTGCTCTGTCTCACTCGCTGCGAGCAGGCTGCTTTCAGGACCAGGAAAGAACCCTGTTGTGTTTATGGATATTGCAGCTGACGGCGAGTTCATTGGAAGAATTATTATTGAGctTTTCGCTGATGTTGTACCCAAAACTGTTGCAAACTTTCGCGCCCTGTGTACAGGAGAGCATGGTTTTGGATATAAAGGTTCAGTGTTTCACAGAATCATCCCAGAGTTCATGTGTCAGGGTGGAGATTTCACTAATCACAATGGCACTGGTGGAAAGTCTATATATGGAAAGAAATTTAACGATGAGAATTTCAAGCTGAAACACACTGGAGCAGGTATTTTGTCAATGGCAAACTCTGGACCAAACACAAATGGTTCTCAGTTTTTCATCTGCACTGCAAAAACAGAATGgCTAGATGGGAAACATGTTGTGTTTGGACAGGTCAAAGAGGGAATGGAGACGGTCTCTCTGATGGAGTCCTATGGCCTGCATGATGGAGGAACTGTGAAGAAGGTTGCCATCACAGACTGTGGAGAACTCCAGTAACCCAGGACATTTTTGATTTTAATCGAACCAAAAGTCTTTACGCATGTATTTTTTCTACAGTACTTACCTATCGCCATTTAAATGTGTGAGTCTGTGGATTCGTTAACATGTTTTATGCTTGCTAAGTAAGCAAAAGACTCAGTGCGTATGGTTATAACTTACTCCTACACAAGAAGCCTTGCTTATGGGTCAAACACCTTGGGCATTGAGGAAATGTACTCTGTTAAAGCCATTTTTTGGTTTTGAAATGAGGATAAATGCTATATGGAGATTGTTTACCTTCTAAGAACGATGCCAGAGAAACCCCAGgaggcattttaaataaataaattacacacagAA
>TCONS_00011980
TTTGTTGATGGGTTTTCAACTCTACAGCAAGAATGTTACAGATGAAAAGCCGTTTGAAATATTGCTCTGTCTCACTCGCTGCGAGCAGGCTGCTTTCAGGACCAGGAAAGAACCCTGTTGTGTTTATGGATATTGCAGCTGACGGCGAGTTCATTGGAAGAATTATTATTGAGctTTTCGCTGATGTTGTACCCAAAACTGTTGCAAACTTTCGCGCCCTGTGTACAGGAGAGCATGGTTTTGGATATAAAGGTTCAGTGTTTCACAGAATCATCCCAGAGTTCATGTGTCAGGGTGGAGATTTCACTAATCACAATGGCACTGGTGGAAAGTCTATATATGGAAAGAAATTTAACGATGAGAATTTCAAGCTGAAACACACTGGAGCAGGTATTTTGTCAATGGCAAACTCTGGACCAAACACAAATGGTTCTCAGTTTTTCATCTGCACTGCAAAAACAGAATGGTCAAAGAGGGAATGGAGACGGTCTCTCTGATGGAGTCCTATGGCCTGCATGATGGAGGAACTGTGAAGAAGGTTGCCATCACAGACTGTGGAGAACTCCAGTAACCCAGGACATTTTTGATTTTAATCGAACCAAAAGTCTTTACGCATGTATTTTTTCTACAGTACTTACCTATCGCCATTTAAATGTGTGAGTCTGTGGATTCGTTAACATGTTTTATGCTTGCTAAGTAAGCAAAAGACTCAGTGCGTATGGTTATAACTTACTCCTACACAAGAAGCCTTGCTTATGGGTCAAACACCTTGGGCATTGAGGAAATGTACTCTGTTAAAGCCATTTTTTGGTTTTGAAATGAGGATAAATG

Function

symbol description
ppifa Predicted to enable cyclosporin A binding activity and peptidyl-prolyl cis-trans isomerase activity. Predicted to be involved in protein folding and protein peptidyl-prolyl isomerization. Predicted to be active in cytoplasm. Orthologous to human PPIF (peptidylprolyl isomerase F).

GO:

id name namespace
GO:0000413 protein peptidyl-prolyl isomerization biological_process
GO:0006457 protein folding biological_process
GO:0005737 cytoplasm cellular_component
GO:0016853 isomerase activity molecular_function
GO:0003755 peptidyl-prolyl cis-trans isomerase activity molecular_function
GO:0016018 cyclosporin A binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040912-52 Predicted to enable cyclosporin A binding activity and peptidyl-prolyl cis-trans isomerase activity. Predicted to be involved in protein folding and protein peptidyl-prolyl isomerization. Predicted to be active in cytoplasm. Orthologous to human PPIF (peptidylprolyl isomerase F).

Ensembl:

ensembl_id ENSDARG00000007409

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00011979 False 1032 mRNA 0.41 6 30572172 30575799
TCONS_00011980 True 831 mRNA 0.41 6 30572260 30575717

Neighbor

gene id symbol gene type direction distance location
XLOC_006064 zmiz1a coding upstream 1313 30421472 ~ 30570859 (+)
XLOC_006065 AL844152.1 coding upstream 60449 30511607 ~ 30511723 (+)
XLOC_006063 AL929330.1 coding upstream 320315 30251741 ~ 30251857 (+)
XLOC_006062 qrfpra coding upstream 336952 30215765 ~ 30235220 (+)
XLOC_006061 pald1b coding upstream 357804 30169233 ~ 30214368 (+)
XLOC_006067 NA coding downstream 101026 30676825 ~ 30677643 (+)
XLOC_006068 CR762483.1 coding downstream 116870 30692669 ~ 30695994 (+)
XLOC_006069 cxcl18a.1 coding downstream 120487 30696286 ~ 30699369 (+)
XLOC_006070 cxcl12a coding downstream 228568 30804367 ~ 30819715 (+)
XLOC_006071 CR762493.1 coding downstream 260857 30836656 ~ 30836776 (+)
XLOC_006056 NA non-coding upstream 680352 29889189 ~ 29891820 (+)
XLOC_006054 CT025909.2 non-coding upstream 816745 29755293 ~ 29755427 (+)
XLOC_006053 CT025909.1 non-coding upstream 981057 29590994 ~ 29591115 (+)
XLOC_006074 NA non-coding downstream 344755 30920554 ~ 30928661 (+)
XLOC_006101 NA non-coding downstream 1230721 31806520 ~ 31850508 (+)
XLOC_006102 NA non-coding downstream 1379421 31955220 ~ 31978484 (+)

Expression


Co-expression Network