AMCG00011127


Basic Information

Item Value
gene id AMCG00011127
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 11930396 ~ 11937533 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00011127
cagcagcaggaggaggaagaggaggaggaggaggaggaggaggaggtggggtacCCTAGCAGTTACGCCCCCTCGCCACCAGAGCGCCACTACAGCCCCCCCCACAGCCAAGGTGGCCTCGGGGGGTACCAGTCAGAGGGGTATGAGAGCCCACCTGAGGAGGagcccccccccagccccccccgcAAAGAGATCAAACATTCTTCACAGACGGTCAGGCCACACAAGGACCCGACGCGGGAACGGGGCTCTCACGGCGACAGGGAGCATCGTCACGGCGACAGACTCCAGGGCAGCAGCGGGGGCAAGAAGCGCAGTAAAGACACTGAGCCACAGGGCAGCGCCAGAGAGGACAAGCCCCCCAAACACAGCCGGCAGCACCCCGCTCCCCCACGCGGGGCAGACAAGGAGGGCAAGAGCGACCGCAGGGCGGGGGCAGAGGgaaaGACAAGGGACCACAGGGGGGCTCAGCACAGGCCCAGGCAGTCCTCTCGGGGGCGAGGGGGTGAGgacgaggaggaagaggggggggcAGGGCAGAGAGTGGTGGAGGAAGAGCAGTTTGAGACCCCCACCATGTCCTTCGAGTCCTTCCTAACCTACGACGCGCCACCCCctgggaagaagaagaagaaacagcaGCACCAGGCGGCCCCTGCCTACTCCTCCACTCGCCCCCCAACTTCTGCCGGCGCTACCCCAAGCAAAGCCAATGGGACCCAAGGGAAACGCCCCAGACAGACCCCCCCTGCCCCAGGCTCCTCAGCCTCCACCCCTGCCACCCCCACAACACCCCCCACCCGTGAGAAACGCAGGAAGGTGGTAGACACAGTGCCTGCGCTTCCTGATATTCCTCTGCCAGTGATCCAGCCCCACTACCGCCCACTACCCTCGCTTGACCTCACCCCGCTGTCACCCCAGAGGCGCAAGGTTCCTCAGTCATGTGACGAAGAGGATACTGGCTTCACTGGGCGGCGCTTCAATTCCAAGATGGCGGTGTACTCCGGCACCAAGACAGCCTGCCTGCCCAAGATGATGAGCCTTTACGAGCAGTGCATCCGCGTGCTACAGAACAACATCGACTCGATCGatgaggtggggggggtgccCTATGAGATCCtggagccggtgctggagcgATGCACCCCCGAGCAGCTGTACCGCATAGAGCAGTGCAACCAGtACTTCACGGAGGACTCAGACGAGCTTTGGATGCGTCACTGCCAGAGGGACTTCCGGCGGCAGTGCCCGGAGGAGTACGAGTCCTGGCGTGAGCTGTACCTGCGCCTGCACGACGAGCGGCGGCAGGTGAAAATGGCATTTGTGAACTCTGCTGTAAAGCCCCCCCGCGATGTACGCCGACGGCAAGAGAGATTCGGCACCGCCTCCTCCAGCTCCGCCCCCCCAGCCGCTGCTCCCGCACGtATTCGTCCTGCCCAGATGTACAGCTCCTCCCACGTTGATTCAATCCCCAGCTCATCCCACAGCAGCCCCCCTGAGGCTCCGCGCTCCTCCTCTGGGGGTGGGCAGTCTGCAGGGGGCGGCACCAGCAACAAGCCCCAGGTTAAAAagaTTGCCCCAATGATGGCCAAGACTATCAAAGCTTTCAAGAACAGATTTTCCAGACGgtagatggagagatggagaacTGGAGCGAAAGGAGAGAAAGAAGTGAGATTGTAGCCCCTCCCCCTCATCCTgcaccctgcccccccccccagggagagaggggtgggggtggtttGGCTGAGAGACTAAGAGACAGCAGcccctaaacacacacacacacacacacaccctcttaGGCCCTCTCACGCCCTCTCACACCCTCTCACATGCACAGACAAGCTTAACCCTCAGAGGACTGAGACAATTTATACTTGTTTGTACCACTTTTACATTctagctgataaacaatatgtatctatttttcaGAACAACCTCTGCTAAATGCATTCttcatgtataatgtacttataagaTAGTATTTGAGTgaacaatgtgcaataaagttAAATGAGAAAtggaatttctttttttttttttattattattgactgcACACCCCACACAGTAATAGTGAACAgttttgacacttagaacatgctcttcaaagccttaggtattgaaatatacattgtctttcaataaactatatacataacactgaaataatgcaccttttttGCAAACTGCCCCAGGCAAACAGTGAAATTCTGTTTTCCCTGAATTATTCAGATCCCTCAGACATGTcactgagcaaagctgggcatctccaggaagtggcagaggggcacctggcatgccagggggtcttgttatatattctgctgacctTACAATCTGgatcagcttctgttttcctttgctggaaaataaaaatctagttctgtttctttttttactttattgcacattttccacttatataatatatactgtattataagtacataatacatgcttagctgaagctgttctgaatccatagatatCTCATATATAGCAGTAGCATCTAGAATAGCTGAGTTATGAGCTGAATTGTATAagcctctccctctcactctgcTGGCTCTCCCACCTCTCTGTCACTGCTCGGTCTGGACACTTGTCAGCTGATCTATTCCAGCTGCCTGAGACAGGTTTTTTTGATTGGCTAGTAAAGGCAGATCTCCATGGGACATGACACACAgtaacatcctctccattgggcaATTCCAGACCCATGTGCTGCATTGTGCATTGAATTTCTAGAACCAGGAAGTATGCGACGTACACAAACCGCACATGGTatttttcagcagaatctcagctatgcagctaaaaaaacatttctcagataattaatactttgtaattgatgcccgAATTTAGGGTGGATCCTCTTAAATCGTCCTCAGAGGGTTAAACAAGAAATAGTTGTACACTGCAGACACACTGTCCACTGTTCACTACACACTGCAGgtaggcagacagacagacagacagacagaccgatAGATGGACAGGCACTTGATCTGATCTGTAAACTTTGCTGTTCATTATGCTGGATGGAGGCTTTCCAGGATCAGGGCTGTTCCTCTTCACTATCATACTATgtactcaacacacacacacacacacacacacacacacacacacacattgaggCAGAAGCAGACAGTCCTATGTAGACACACACAGTTgcagtaatacacacacacacacacacacacacaatagacctcccccccacctcccttcCCCTACTTCTCTTGCTGTGTGCTGAGTCACTGTACTGACAGGAAAGGGAACAAACCTGGGATCTCTTGGTGCTggtgggaagagagagagggtgagaatGAGAGTGTATGAGATGAGAGTGTATGAgacagagagtgtgtgagaaTGAGAGTGTGTGAACAGAGGTggtggggctggggggctggggaAGGAACGGGAGGGGAATgggaagggagagg

Function

GO: NA

KEGG:

id description
ko04137 Mitophagy - animal

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00011127 True 3461 mRNA 0.53 9 11930396 11937533

Neighbor

gene id symbol gene type direction distance location
AMCG00011132 NA coding downstream 523 11927100 ~ 11929873 (-)
AMCG00011126 lypla2 coding downstream 5937 11918704 ~ 11924459 (-)
AMCG00011123 sfpq,LOC107558579,LOC107706594 coding downstream 13375 11907461 ~ 11917021 (-)
AMCG00011130 NA coding downstream 31148 11891687 ~ 11899248 (-)
AMCG00011124 NA coding downstream 39298 11872604 ~ 11891098 (-)
AMCG00011131 rpl11,LOC106570028,LOC107589447,LOC107591640 coding upstream 10707 11948240 ~ 11951000 (-)
AMCG00011128 NA coding upstream 14583 11952116 ~ 11958308 (-)
AMCG00011129 NA coding upstream 41420 11978953 ~ 11984808 (-)
AMCG00011138 NA coding upstream 66563 12004096 ~ 12008953 (-)
AMCG00011137 LOC107589451,LOC104962793 coding upstream 77620 12015153 ~ 12033399 (-)
G104449 NA non-coding downstream 233337 11663592 ~ 11697059 (-)
G104376 NA non-coding downstream 273563 11649005 ~ 11656833 (-)
G104342 NA non-coding downstream 336054 11587058 ~ 11594342 (-)
G104341 NA non-coding downstream 336777 11511223 ~ 11593619 (-)
G104319 NA non-coding downstream 504171 11420749 ~ 11426225 (-)
G104513 NA non-coding upstream 39818 11977351 ~ 11978288 (-)
G104545 NA non-coding upstream 101636 12039169 ~ 12039376 (-)
G104568 NA non-coding upstream 139195 12076728 ~ 12144122 (-)
G104591 NA non-coding upstream 198435 12135968 ~ 12142015 (-)
G104598 NA non-coding upstream 218909 12156442 ~ 12156731 (-)
AMCG00011086 NA other downstream 2186611 9741133 ~ 9743785 (-)
AMCG00011084 dlgap3,LOC106933674,LOC106958363 other downstream 2311117 9601377 ~ 9619279 (-)
AMCG00011058 srrm1,LOC107583602,LOC107721297,LOC106579139 other downstream 2694168 9222268 ~ 9236228 (-)
AMCG00011051 NA other downstream 3066345 8819551 ~ 8864051 (-)
G103832 NA other downstream 3903365 7938137 ~ 8027031 (-)
AMCG00011125 eef1a1l2,LOC107589444,LOC107706209,LOC107654701,LOC100136525,LOC105027913 other upstream 21705 11959238 ~ 11971002 (-)
AMCG00011140 NA other upstream 53296 11990829 ~ 11997786 (-)
AMCG00011135 NA other upstream 128962 12066495 ~ 12069079 (-)
G104629 LOC100194717,LOC107660902,LOC107754487,LOC107655673 other upstream 388564 12326097 ~ 12328282 (-)
AMCG00011152 kcnip1 other upstream 490460 12427993 ~ 12457327 (-)

Expression


Co-expression Network