AMCG00011131 (rpl11,LOC106570028,LOC107589447,LOC107591640)


Basic Information

Item Value
gene id AMCG00011131
gene name rpl11,LOC106570028,LOC107589447,LOC107591640
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 11948240 ~ 11951000 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00011131
CGGAGCTGCACAGGCGGACACTGCAGCTTAAAAGCCGGCGCCGGAAGTCTGTCGCTCTCTTCTAGTGCTCCAACATGGCGGAACAGGGTGAGAAGAAGGAGAACCCAATGCGTGAGCTGCGGATCCGCAAGCTGTGCCTGAACATCTGTGTGGGTGAGAGCGGTGACAGGCTGACCCGTGCTGCCAAGGTGCTGGAGCAGCTGACCGGACAGACGCCCGTCTTCTCCAAGGCCCGTTACACTGTGCGTTCATTCGGGATCCGCAGGAATGAGAAGATCGCAGTGCACTGCACCGTACGTGGTGCCAAAGCCGAGGAGATCCTGGAGAAGGGCCTCAAGGTGCGCGAGTACGAGCTGAGGAAGAACAACTTCTCGGACACGGGCAACTTCGGCTTTGGCATCCAGGAGCACATCGACCTGGGCATCAAGTATGACCCCAGCATCGGTATCTACGGCCTGGACTTCTACGTGGTTCTGGGCAGGCCCGGGTTCAGCATTGCAGACAAAAAGCAGAAGACTGGTCGTATTGGCGCCAAGCACCGCATCAGCAAGGAGGAGGCCATGCGCTGGTTCCAGCAGAAGTATGATGGCATCATCCTCCCGGGCAAGTGAGAAGGATGCTGCAGACTCCGCCGCTGTCTCAGTttgtaaaaaatgcaaaatgacaataaaaaaaatacaaaagccaAAA

Function

symbol description
rpl11 Predicted to enable RNA binding activity. Predicted to be a structural constituent of ribosome. Acts upstream of or within several processes, including erythrocyte development; glucose homeostasis; and hemoglobin biosynthetic process. Predicted to be located in ribosome. Predicted to be part of cytosolic large ribosomal subunit. Is expressed in endodermal cell; eye; intestine; liver; and pancreas. Used to study Diamond-Blackfan anemia. Human ortholog(s) of this gene implicated in Diamond-Blackfan anemia 7 and T-cell acute lymphoblastic leukemia. Orthologous to human RPL11 (ribosomal protein L11).

NR:

description
PREDICTED: 60S ribosomal protein L11 isoform X2

GO:

id name namespace
GO:0006915 apoptotic process biological_process
GO:0006412 translation biological_process
GO:0030218 erythrocyte differentiation biological_process
GO:0042593 glucose homeostasis biological_process
GO:0009790 embryo development biological_process
GO:0005840 ribosome cellular_component
GO:0003735 structural constituent of ribosome molecular_function

KEGG:

id description
K02868 RP-L11e, RPL11; large subunit ribosomal protein L11e

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00011131 True 690 mRNA 0.56 6 11948240 11951000

Neighbor

gene id symbol gene type direction distance location
AMCG00011127 NA coding downstream 10707 11930396 ~ 11937533 (-)
AMCG00011132 NA coding downstream 18367 11927100 ~ 11929873 (-)
AMCG00011126 lypla2 coding downstream 23781 11918704 ~ 11924459 (-)
AMCG00011123 sfpq,LOC107558579,LOC107706594 coding downstream 31219 11907461 ~ 11917021 (-)
AMCG00011130 NA coding downstream 48992 11891687 ~ 11899248 (-)
AMCG00011128 NA coding upstream 1116 11952116 ~ 11958308 (-)
AMCG00011129 NA coding upstream 27953 11978953 ~ 11984808 (-)
AMCG00011138 NA coding upstream 53096 12004096 ~ 12008953 (-)
AMCG00011137 LOC107589451,LOC104962793 coding upstream 64153 12015153 ~ 12033399 (-)
AMCG00011139 psmb2,LOC107591978,LOC107592948,LOC107688376 coding upstream 102638 12053638 ~ 12059625 (-)
G104449 NA non-coding downstream 251181 11663592 ~ 11697059 (-)
G104376 NA non-coding downstream 291407 11649005 ~ 11656833 (-)
G104342 NA non-coding downstream 353898 11587058 ~ 11594342 (-)
G104341 NA non-coding downstream 354621 11511223 ~ 11593619 (-)
G104319 NA non-coding downstream 522015 11420749 ~ 11426225 (-)
G104513 NA non-coding upstream 26351 11977351 ~ 11978288 (-)
G104545 NA non-coding upstream 88169 12039169 ~ 12039376 (-)
G104568 NA non-coding upstream 125728 12076728 ~ 12144122 (-)
G104591 NA non-coding upstream 184968 12135968 ~ 12142015 (-)
G104598 NA non-coding upstream 205442 12156442 ~ 12156731 (-)
AMCG00011086 NA other downstream 2204455 9741133 ~ 9743785 (-)
AMCG00011084 dlgap3,LOC106933674,LOC106958363 other downstream 2328961 9601377 ~ 9619279 (-)
AMCG00011058 srrm1,LOC107583602,LOC107721297,LOC106579139 other downstream 2712012 9222268 ~ 9236228 (-)
AMCG00011051 NA other downstream 3084189 8819551 ~ 8864051 (-)
G103832 NA other downstream 3921209 7938137 ~ 8027031 (-)
AMCG00011125 eef1a1l2,LOC107589444,LOC107706209,LOC107654701,LOC100136525,LOC105027913 other upstream 8238 11959238 ~ 11971002 (-)
AMCG00011140 NA other upstream 39829 11990829 ~ 11997786 (-)
AMCG00011135 NA other upstream 115495 12066495 ~ 12069079 (-)
G104629 LOC100194717,LOC107660902,LOC107754487,LOC107655673 other upstream 375097 12326097 ~ 12328282 (-)
AMCG00011152 kcnip1 other upstream 476993 12427993 ~ 12457327 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_014299 rpl11 coding NC_007130.7 CM002903.2 43780970 ~ 43786940 (+)
grasscarp (Ctenopharyngodon idella) CI01075562_00000295_00000925 RL11, RPL11.L, RPL11 coding CI01075562 null 295 ~ 925 (-)