AMCG00011137 (LOC107589451,LOC104962793)


Basic Information

Item Value
gene id AMCG00011137
gene name LOC107589451,LOC104962793
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 12015153 ~ 12033399 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00011137
TGCTGTGATGAACGCAAACAGCACGCCGAGGCAGCGCTCGACCAGTACGTCACCAGTACGTCACCAGCCGTCACAGAGGCGCGCAGCACTGTGGGTAGGGCCGGCCGGCACAGCGGGGCGGAAGTGTGTCTGCAGGCCGTGCAATATGCAGTCCAGCGAGGTGACGAGAACAGGCAGAGCACCGAGCCGAACCGGGCCAGCAGCAGGGGTCTGAGCCCGGCCAGCGACAGCCGCCACACTGTGCCGCGCACACCTGCCTTGTCAGACCTGCCTTTgacggacagagagagcaagagggaCGGATATAAGAGAGACGCGGTGCCGGCGCGGATCTGCACGGCAGGGCTCCCGGGCTGTGCAGCGGTGCAGTGCGCAACCGGCCCCCGTCTCCCTCTCACTCCGCCGCGGTCACTTTACACCTGTCCGCCTGAGCGCCCCTGTTCGGGACACtggagagggggaaggagtGAGTGGACGGCGGCACAGGTGGTGGAGAATGCCCTGTCCTCGCAGTGTGGTGCGGTGCTGTTGGCGCTCTCCGTGCAGTATTAAAAATGGACACTGGTAGCAAGCCTCAAACCACAACTCTCCTGAGTCTGATTGGTCTGAGCCCTGTGGCCTGTGCGGGACCTTTCAGACTCCTCCTCCTATCGCTGACTTGCTTGTGCTCCTGGTTCCCACCCACAGGCTGCAGTGCCCCAGGCTGTGTTGTAGGGGAGTCGGTGTGGGGGGTGCAGTGGAGCAGTGTGAGTTTTGAGGGGTGGCGCGCACTGCCTGCAGGGGGCACGGGGTGGGCCTGTGTGACGCAGTGCTGCCGACAGCCTGCCTGTAGTGCCGTTTGGAGCCGGGGAGGGCTCTGTGTCCTGCTGACCTGTCCTGCCCTGGGAGGCTGCCGGCTGCCCCCCGCTTCTCTGCCCCCCCTGACCACCCCCCGCCATGGCCTGCTGCGACTGCTCAGCCCCCGCGGTGgagggatgagaaggaggaggagtgaAGACGGAGGGAAAGGCAGCCTGGAGAGTGCAAACAGCCCCCGCCACACATCCCAGGACCAGCCTCCAGGCCCTGGTGTACCCAAGCTGTCCAGCCCCCCCCAGCCCACCCCTCCAGTGACTGCAGCCTATCCTACTGCTCTCACCCTCAAGGACATTAAGAAAGATGACCCACACACCAATGGCAGTACCGAGCCATTGGCTCCTCCTCCTACAAGGCAAAGCCCTCCCCCCTCCAGCGGGACTGACACCATTGCAGCATCCAATACCAGCATCTCCAAAGGGTCGCCTCCACCTACAACCCCAACTACACTCGCCCCCACCACACCGACACCAGCTGtgcGGGAGTTGGTGGTGTCTGCGGGGAATAGTGTGGAGGTGACGCTACCGCGCAATGAGGTGGAGCTCAACGCTTTCGTCCTGCCAGAGCTTCCTGCTGGCTCTGACTATGTATTTGACTGGCGCCTGATCACTCACCCGCGCGACTACAGCGGAGAGATGGAGGGCAAACACAGCAAGACCCTGAAACTGAGCAAGCTGACAGTGGGGCTGTATGAGTTCAAGGTGCTcgtggagggagagggagcccATGGAGAGGGATACGTCAACGTCACTGTGAAGCCAGagcccCGTGTTAATAAGCCACCGGTTGCTGTGGTTTCCCCAAAGTTCCAGGAGATCTCCTTGCCGACCAGCTCCACGGTGATTGACGGCAGCCagaGCACTGATGATGATGGCATCGTGTCCTGGCATTGGGAGGAGTTGCGGGGGCCGCTGCGGGAGGAGAAGGTCTCGGCAGACACGCCCATCCTCACCCTCACCAACCTGGTGCCCGGCAACTACACCTTTAGCCTAATGGTGACGGACTCAGATGGGGCACAGAACTCCACGCTTGCCACGCTGGCGGTCAACAAGGCAGTGGACTACCGGCCAGTGGCCAATGCTGGGCCCAACCAGGTCATCACCCTGCCACGCAACTCCATCACATTGCTCGGCAACCAGAGCAGCGACGACCACGGCACCCTGGCCTATGAGTGGTCACTCAGCCCTGCCTCCAAGGGCAAGGTGGTCGAGATGCAGggtgtgAGGACATCCACTCTGCAGCTGTCCGCGATGCAGGAGGGTGACTACACCTTCCAGCTGACCGTGACAGACTCCGCTGGACAGCAGGATACTGCAGAAGTCACTGTTATTGTCCAGCCAGAGAATAACAAGGCACCAGTGGCTGACGCAGGACCGGAGAAGGAGCTGACCCTGCCTGTTGACCACACCTCTCTGGACGGCAGCAAGAGCAGTGATGACCAGAGTATAACCACCTATCACTGGACACAAAGTGGAGGGCCGGCCGGGGCGCGGCTGGAGAATGCGGACAGTGCAGTTGCCACAGTGACGGGGCTGCAGGTGGGCGTGTATGAGTTCACACTGAGCGTGACGGACGAGCGCGGGCTCCAGGGCACGGACACAGTGAGCGTCATAGTGAGGGACGAGATGGACCAGGCACCGGTGGCCAAGGTGGCCGCAGGGGTGCGGGTCAGTCTCCCTGTCCGCACGGCTACACTGGACGGTTCGCACTCCACTGACGATAAGGGTGTGGTCAGCTACGTGTGGACCCGAGACGAGAACAGCCCTGCTGCTGGGGAGGTGTTGAATAACTCTGACCATCAGGCGGTGCTATTGCTGGGTAACCTGGTGGAGGGCAAGTACACCTTCACCCTGATGGTGACAGACAGCAAAGGCCAGAGCAGCTTTGACCATGGCACTGTGGAGGTCAGGCCAgACCCGTGGGTCCGGGAGCAAGTGGAACTGGTTCTGGACGTGCCGGTGGCCCAGCTGACCCAGCGGCAGCGCGGTATGCTCCTGCGCCAGGTGGGGGTGCTACTGGGAGTCCTGGACAGCGACATTGTGGTTCGAGAGGTCAGCGCCTTCAACGAGCTCAGTACTCGGTTGGTGTTCCTGGTGCTGGGGGGACCAGGGCGCCCCCCCCTGTCTGGCCGGGACGTTGCCATGACACTGCGCAGCAAACTGAGGAAACAGAAGAATGACTTCCTGATATTCAGAGCCAGGAGAGTGGACACTGTCATCTGCCAGCTGAACTGCTCGGGTCACGGCCAGTGCGACTCGTTCTCCCGGAGCTGCGTGTGCCACCCCTTCTGGATGGAGAACTTCCTGCTCACACAGCTGGGCGACAGCGAGAGCAACTGCGAGTGGAGTGTTCTGTATGTTACCATCGCTTCATTCCTGATCGTGGTTGCCATAGGGACCCTGGTGTGGGGAGTGGTGTGCTGCTGTCGCaggAGGCGTGGGAGAGTGCGCAGGAAGAGCCGCTATAAGATGCTGGAGGCAGAGGAGCAGGATAGCCTGGAGCTACAGCCACCTAGAGGAGtgCGAGCGAAGCCCCCACCACCTCCACCCTCTTCCTCCCTGATGCGCTCAGACTCTGAGCTGGACAGTGATGAGGGGGCCACGGGCTGGCCTGAGCGGGGGCAGCTGCTGCGCCCCCAGAATGGCTCTGTGCGCAACGGCCAGGGACCCCTAAGAGCCAAGAAACAGCGCGAGGAGCTGCTATAGACCACCCTGGGGCAGGAGGGCCGCACCACAGACAGAGACTGGCCACACTGAACccgacacagacacactcgcacaccaactcactcacacacacccacacacactcgcacactcTGGTAACCCGTCACTGTGAAGCCGGAGGGAGCTGCTGCACCCCAAAGCTGAAGTATGCAATGTTCCCACTCCCAGAAGACGCAGAGAGACTGTGTCCCACCGAGGACAGGTCTGATACACCACTGGGGTACCCCAACTAAAACACCCCAAACCCCCAAACCCACTGTGAGCCAAGAGACTGAGACAACACAGGCTGTACCCCCAGCGGCACACAAACCCaccaacagagagagagcgcaggAGATAGCGGGTGGTACAGCTACAGCAGCGCGGAGGACTCGGAATACCACCAGTAATAATGCTGTGGATTAATAATGGACGGGGACAGAGGCCCTGACACACAGCCTGCTGCAGTGGGGGCGGGGCAAAAGCACCCTTCCACCCTGAAGCTCTGCATGCACCCCCACCCTGAGAGCCCCCCACAGCCGGGGAGAAGCAGGGCAAGGGCACTGGGGCAGCCCTGGAAGACCCCCCTGCACCCCAGAACACTGGAGCCAGACAGCCAGACACAGCGATACACTGAacgcagagtgtgtgtgtgtttgtttgttgcgtgcgtgcgtgtgtgtgtcagtgtgtgatgaGATTCCTACAGGTGTAACTTTCCTCTCCCTTTTCTTCCTCAGTTTTAATTGTTCTTATTTATGATTGCACGTGATTGGGGAGACAGGATTTCTGCTGCTGTAACCATGGCATTATGTCGTCTAGAAATCTGTAACCCCCcccacctgtctgtctgtgtgtttgtcaatCTGAGGCTGACACAGGAGGTGGGACATTCAAATTGGGAGAAGCCGagaatttttatacattttgttgttgttttggatcAGACTGAGAATTCtgggaaaatgttttaatcacaCTGGattcctgcccccccacccccaggttATAGAGAGCCCTGGCTCAGTGAAAAGGGGTGGCATGAGGGCATGGCACTCATCTTGTTTCCTGATTGCTTGATTCAGGCTGGAGGAATTGCATGGTCTGCTTTTaggtgtgttgttttctgttagtttaattccatttcctgtttttctgtttacCTGCtgattatagttttatttaattttgtttttcgtttgtttgtttgtttgtttgttttattattttctgctcAGGCTCTGAGAGCTACTGCCGAAGAGCGAATCTGCACAACACGACTGTGAATGTAGAGTACTATACAGGGTAGTACAGGGCagggtaatttattttttggcccTGTTGTGCCATATGGTGCAATTCATTTTGCTACAGGGCAGTAGTATGTCACTGTAGAGTACAGAGCATTGAAGTGCAGTACAGCGCAGTATACTGTGGCACACCAGACACTGCAGCGCACTGTAGCAGTCAGTGTGCTGAGGGACAGCGTCCCGTACTGCAGTGTGAAGGCAGCCAGGCAGGCAGGCATTATGTTGTTCAGTCAGGCAGGCAGGAGTCTGTAGCCACCAAGCAATGAAGGGATTGTTTAGTTATGATTTTAACTGTCTGTTTAGTCTGTTTGTTGATAATGTTTAGTTTTACCTGGAGAATGTGGTGAGTGTGTCCTGTGGCTCAACTGGACTGTCAGAAAATAAAGAGAAG

Function

NR:

description
PREDICTED: dyslexia-associated protein KIAA0319-like protein

GO:

id name namespace
GO:0007156 homophilic cell adhesion via plasma membrane adhesion molecules biological_process
GO:0016020 membrane cellular_component
GO:0005509 calcium ion binding molecular_function

KEGG:

id description
K24404 KIAA0319L; dyslexia-associated protein KIAA0319-like protein

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00011137 True 5261 mRNA 0.58 24 12015153 12033399

Neighbor

gene id symbol gene type direction distance location
AMCG00011138 NA coding downstream 6200 12004096 ~ 12008953 (-)
AMCG00011129 NA coding downstream 30345 11978953 ~ 11984808 (-)
AMCG00011128 NA coding downstream 56845 11952116 ~ 11958308 (-)
AMCG00011131 rpl11,LOC106570028,LOC107589447,LOC107591640 coding downstream 64153 11948240 ~ 11951000 (-)
AMCG00011127 NA coding downstream 77620 11930396 ~ 11937533 (-)
AMCG00011139 psmb2,LOC107591978,LOC107592948,LOC107688376 coding upstream 20239 12053638 ~ 12059625 (-)
AMCG00011136 NA coding upstream 38268 12071667 ~ 12085428 (-)
AMCG00011150 NA coding upstream 232108 12265507 ~ 12275549 (-)
AMCG00011149 NA coding upstream 267386 12300785 ~ 12306207 (-)
AMCG00011151 NA coding upstream 354864 12388263 ~ 12402070 (-)
G104513 NA non-coding downstream 36865 11977351 ~ 11978288 (-)
G104449 NA non-coding downstream 318094 11663592 ~ 11697059 (-)
G104376 NA non-coding downstream 358320 11649005 ~ 11656833 (-)
G104342 NA non-coding downstream 420811 11587058 ~ 11594342 (-)
G104341 NA non-coding downstream 421534 11511223 ~ 11593619 (-)
G104545 NA non-coding upstream 5770 12039169 ~ 12039376 (-)
G104568 NA non-coding upstream 43329 12076728 ~ 12144122 (-)
G104591 NA non-coding upstream 102569 12135968 ~ 12142015 (-)
G104598 NA non-coding upstream 123043 12156442 ~ 12156731 (-)
G104660 NA non-coding upstream 341668 12375067 ~ 12379667 (-)
AMCG00011140 NA other downstream 17367 11990829 ~ 11997786 (-)
AMCG00011125 eef1a1l2,LOC107589444,LOC107706209,LOC107654701,LOC100136525,LOC105027913 other downstream 44151 11959238 ~ 11971002 (-)
AMCG00011086 NA other downstream 2271368 9741133 ~ 9743785 (-)
AMCG00011084 dlgap3,LOC106933674,LOC106958363 other downstream 2395874 9601377 ~ 9619279 (-)
AMCG00011058 srrm1,LOC107583602,LOC107721297,LOC106579139 other downstream 2778925 9222268 ~ 9236228 (-)
AMCG00011135 NA other upstream 33096 12066495 ~ 12069079 (-)
G104629 LOC100194717,LOC107660902,LOC107754487,LOC107655673 other upstream 292698 12326097 ~ 12328282 (-)
AMCG00011152 kcnip1 other upstream 394594 12427993 ~ 12457327 (-)
G104715 NA other upstream 514890 12548289 ~ 12548993 (-)
G104749 NA other upstream 601457 12634856 ~ 12640227 (-)

Expression


Co-expression Network