AMCG00011138


Basic Information

Item Value
gene id AMCG00011138
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 12004096 ~ 12008953 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00011138
CTACTCTGCACTGTACGGTAGCTCCGGGGGTCAATGCGTGACGTCGACGACCAGGAAGAGAAACATTcaggcagaaagagagagagaagcggGGAGACGTTGTGCGGAACCGAGTGGGTCGTTCAGCCACTGTTGTTGAATCTATCTGTCCGAACCGCAGCGAGCACGGCCGGGATGTCGGTGTCTGCGGCGGCGGCTGGGGCCCGACTGAGCGGGACACTGGGGGCGGGTGGGACGACGACACTCAGCCGGTTCCGAGGCGCTCTGGTCGGGGCGGTTCTTGGTGATTGTATCGGCGGGGAGTTCGAGGGCGCGGAGGAGGTGCCTCTGGACCGGGTCTTGCAGCACCTCAACTCTCTGGAGCAGGAGAACCGGGGCGACGCGATCCTGCAGTACTCTGATGACACTGCTATGACACGCTGTGTGGCGCAGTCTCTGCTGACCCGTGGGGAGTTCGATCAGGTTGACCTGGCACACAGgTTTGCAGAGGAGTACAGGCAGTCCCCGGCGCGGGGGTATGGAGCGGGGGTGGTGGCGGTGCTGCGGCGGCTGCTGAGCCCCCCCTTGGGTGATGTGTTCCAGCCCGCCACCCTGCAGTTTGGGGGGAGGGGCTCCTTTGGCAACGGGGGGGCCATGAGAGCCACGCCCTTCGCCCTCGCCTTTCCCAACGCACAGGATGTGGAaaggttctCTCGGCTGGGAGCCCTGCTGACACACTCCTGCTCTCTGGGCTACAATGGTAATGGTATTGCAGCCTTGCAGTCAGTTCCCACAGCGATCTTCTGTGTGCTGCACTGCCTGCAGCCGCGCCCTGAGCTGCCCGCACACTATGGTGGTCTGGAGAGGACACTGGCATTCTGCCTGGCACTGGGGGGGGACACAGACACCATTGCCAGCATGGCGGGGGCCATCGCCGGTGCCCACTATGGCCTGGAGGCCATCCCATCGCAGTGGAAACGCTGCTGTGAAGGTGCAGAGGAGGCGGAGCTTTGGGCAGAGCGGCTGCACCAGCTGTACCAGAGGCGAGCACAAGGCGGCGACACTGAGTcacaccacactgacacacacagagactcgccgactgactgacacaccacactggctggctgactgacacactgactgactgatacagtgactgacacactggctaGCTGAccagcactgactgactgacacactgactgtctaacacacacactgtctgacacactgactgactgatacactagctagctgacagacacactgactaatacactgactgactgactgacacacaatCTCAGTGTCTTGGGCTGTTCAGGGAGGGGCTCTAATTCTGTTATTTTACCTTTGCTCATAATAAACTTTTTAAGAATTATAAAGAAA

Function

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0005634 nucleus cellular_component
GO:0005737 cytoplasm cellular_component
GO:0046872 metal ion binding molecular_function
GO:0004649 poly(ADP-ribose) glycohydrolase activity molecular_function

KEGG:

id description
K11687 ADPRHL2; poly(ADP-ribose) glycohydrolase ARH3

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00011138 True 1371 mRNA 0.60 5 12004096 12008953

Neighbor

gene id symbol gene type direction distance location
AMCG00011129 NA coding downstream 19288 11978953 ~ 11984808 (-)
AMCG00011128 NA coding downstream 45788 11952116 ~ 11958308 (-)
AMCG00011131 rpl11,LOC106570028,LOC107589447,LOC107591640 coding downstream 53096 11948240 ~ 11951000 (-)
AMCG00011127 NA coding downstream 66563 11930396 ~ 11937533 (-)
AMCG00011132 NA coding downstream 74223 11927100 ~ 11929873 (-)
AMCG00011137 LOC107589451,LOC104962793 coding upstream 6200 12015153 ~ 12033399 (-)
AMCG00011139 psmb2,LOC107591978,LOC107592948,LOC107688376 coding upstream 44685 12053638 ~ 12059625 (-)
AMCG00011136 NA coding upstream 62714 12071667 ~ 12085428 (-)
AMCG00011150 NA coding upstream 256554 12265507 ~ 12275549 (-)
AMCG00011149 NA coding upstream 291832 12300785 ~ 12306207 (-)
G104513 NA non-coding downstream 25808 11977351 ~ 11978288 (-)
G104449 NA non-coding downstream 307037 11663592 ~ 11697059 (-)
G104376 NA non-coding downstream 347263 11649005 ~ 11656833 (-)
G104342 NA non-coding downstream 409754 11587058 ~ 11594342 (-)
G104341 NA non-coding downstream 410477 11511223 ~ 11593619 (-)
G104545 NA non-coding upstream 30216 12039169 ~ 12039376 (-)
G104568 NA non-coding upstream 67775 12076728 ~ 12144122 (-)
G104591 NA non-coding upstream 127015 12135968 ~ 12142015 (-)
G104598 NA non-coding upstream 147489 12156442 ~ 12156731 (-)
G104660 NA non-coding upstream 366114 12375067 ~ 12379667 (-)
AMCG00011140 NA other downstream 6310 11990829 ~ 11997786 (-)
AMCG00011125 eef1a1l2,LOC107589444,LOC107706209,LOC107654701,LOC100136525,LOC105027913 other downstream 33094 11959238 ~ 11971002 (-)
AMCG00011086 NA other downstream 2260311 9741133 ~ 9743785 (-)
AMCG00011084 dlgap3,LOC106933674,LOC106958363 other downstream 2384817 9601377 ~ 9619279 (-)
AMCG00011058 srrm1,LOC107583602,LOC107721297,LOC106579139 other downstream 2767868 9222268 ~ 9236228 (-)
AMCG00011135 NA other upstream 57542 12066495 ~ 12069079 (-)
G104629 LOC100194717,LOC107660902,LOC107754487,LOC107655673 other upstream 317144 12326097 ~ 12328282 (-)
AMCG00011152 kcnip1 other upstream 419040 12427993 ~ 12457327 (-)
G104715 NA other upstream 539336 12548289 ~ 12548993 (-)
G104749 NA other upstream 625903 12634856 ~ 12640227 (-)

Expression


Co-expression Network