AMCG00011139 (psmb2,LOC107591978,LOC107592948,LOC107688376)


Basic Information

Item Value
gene id AMCG00011139
gene name psmb2,LOC107591978,LOC107592948,LOC107688376
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 12053638 ~ 12059625 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00011139
AAGTCCAGCGTCCGTGTCTCCATATTTGCTGTGTAATATTAAGTTACGTCCGGTTTGCGATCCGACAGAAAGCTGAGACAGAACACTTACGGGTCTGAAACACTAACATAGTGAAACAGGGAGACCCGTTCGCCCGGTAAACGCTCCGGTTTTGAAGATGGAATATCTAATCGGAATCCAGGGGCCCGACTTTGTTTTAGTCGCCGCCGACAATGTGGCCGCCAGCAGCATCATCCAGATGAAACACGACTATGACAAGATGTTCAAACTGAGTGAGAAGATCCTGCTGTTGTGTGTAGGCGAGGCGGGTGACACTGTGCAGTTCGCAGAGTACATCCAGAAGAATGTGCAGCTGTACAAGATGAGGAACGggTATGAGCTCAGTCCTGCTGCTGCCGCCAATTTCACACGGAAGAACCTGGCAGACTACCTGCGGAGTCGGACGCCATACCATGTGAACCTTCTTCTGGCGGGCTGTGATGAGGCCGAGGGGCCGGCGCTGTACTACATGGATTACCTGTCCTCTCTGGCCCGCGCACCTTTCGCTGCCCACGGCTATGGCGCCTTCCTCACCCTGTCCATCCTGGACCGCTACTATCGCCCTGATCTGACCCGAGAGGAAGCAGTGGAGCTGTTAAAAAAGTGCCTGGAAGAGtTGAATAAGCGGTTTATCCTGCACCTTCCTTCCTTCACTGTGCGTCTAATTGACAAGGACGGGATCCACGACATGGAGAAACTGCCACTGGCTGcaccctgacctctgaccccaacCCCTGGCCTGCTTTTGTACTGGACCCCTTGTACCCCTTTTTAACCCCAATAAAGTCCATAACACACAGAGCCTCTGTTTGTCTGAGAGTCTGTGCATGTCTATGtatttaatactgtttatttggtttagtattttacatttcataaaataaaaacaattcaa

Function

symbol description
psmb2 Predicted to enable peptidase activity. Predicted to be involved in proteasomal protein catabolic process. Predicted to act upstream of or within proteolysis involved in cellular protein catabolic process. Predicted to be located in cytoplasm. Predicted to be part of proteasome core complex, beta-subunit complex. Predicted to be active in cytosol and nucleus. Orthologous to human PSMB2 (proteasome 20S subunit beta 2).

NR:

description
PREDICTED: proteasome subunit beta type-2-like

GO:

id name namespace
GO:0051603 proteolysis involved in cellular protein catabolic process biological_process
GO:0005839 proteasome core complex cellular_component
GO:0005634 nucleus cellular_component
GO:0005737 cytoplasm cellular_component
GO:0004298 threonine-type endopeptidase activity molecular_function

KEGG:

id description
K02734 PSMB2; 20S proteasome subunit beta 4

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00011139 True 934 mRNA 0.51 6 12053638 12059625

Neighbor

gene id symbol gene type direction distance location
AMCG00011137 LOC107589451,LOC104962793 coding downstream 20239 12015153 ~ 12033399 (-)
AMCG00011138 NA coding downstream 44685 12004096 ~ 12008953 (-)
AMCG00011129 NA coding downstream 68830 11978953 ~ 11984808 (-)
AMCG00011128 NA coding downstream 95330 11952116 ~ 11958308 (-)
AMCG00011131 rpl11,LOC106570028,LOC107589447,LOC107591640 coding downstream 102638 11948240 ~ 11951000 (-)
AMCG00011136 NA coding upstream 12042 12071667 ~ 12085428 (-)
AMCG00011150 NA coding upstream 205882 12265507 ~ 12275549 (-)
AMCG00011149 NA coding upstream 241160 12300785 ~ 12306207 (-)
AMCG00011151 NA coding upstream 328638 12388263 ~ 12402070 (-)
AMCG00011159 NA coding upstream 437722 12497347 ~ 12499099 (-)
G104545 NA non-coding downstream 14262 12039169 ~ 12039376 (-)
G104513 NA non-coding downstream 75350 11977351 ~ 11978288 (-)
G104449 NA non-coding downstream 356579 11663592 ~ 11697059 (-)
G104376 NA non-coding downstream 396805 11649005 ~ 11656833 (-)
G104342 NA non-coding downstream 459296 11587058 ~ 11594342 (-)
G104568 NA non-coding upstream 17103 12076728 ~ 12144122 (-)
G104591 NA non-coding upstream 76343 12135968 ~ 12142015 (-)
G104598 NA non-coding upstream 96817 12156442 ~ 12156731 (-)
G104660 NA non-coding upstream 315442 12375067 ~ 12379667 (-)
G104665 NA non-coding upstream 342739 12402364 ~ 12402564 (-)
AMCG00011140 NA other downstream 55852 11990829 ~ 11997786 (-)
AMCG00011125 eef1a1l2,LOC107589444,LOC107706209,LOC107654701,LOC100136525,LOC105027913 other downstream 82636 11959238 ~ 11971002 (-)
AMCG00011086 NA other downstream 2309853 9741133 ~ 9743785 (-)
AMCG00011084 dlgap3,LOC106933674,LOC106958363 other downstream 2434359 9601377 ~ 9619279 (-)
AMCG00011058 srrm1,LOC107583602,LOC107721297,LOC106579139 other downstream 2817410 9222268 ~ 9236228 (-)
AMCG00011135 NA other upstream 6870 12066495 ~ 12069079 (-)
G104629 LOC100194717,LOC107660902,LOC107754487,LOC107655673 other upstream 266472 12326097 ~ 12328282 (-)
AMCG00011152 kcnip1 other upstream 368368 12427993 ~ 12457327 (-)
G104715 NA other upstream 488664 12548289 ~ 12548993 (-)
G104749 NA other upstream 575231 12634856 ~ 12640227 (-)

Expression


Co-expression Network