AMCG00011142


Basic Information

Item Value
gene id AMCG00011142
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 12143862 ~ 12148439 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00011142
ATGGCCACTCTGAGTGTAAAGCCCGGACAGCGCTTCAGCGTGCCTGACTGGCAGACCAACAGCCAACTACTCTCCAGCACCGCTGAGAACCAGCGAAGTATATCGCATCAAATACGGCAAGAGGGACGGGCACTACGCACTGAGACCACCAATCAGACGCTCTGGGATCAGCAGGATACTTGCTCTCGGCTGTATGAACGGGCGCAGGATGTGGCGCGCTGGAAGGATGCTCTGGAGGCCAGTCGAAAGGAAGTGGACACAGAGATAGAGGCCCTCTCTGAGGTGAAGGAGGATGCAGAGAGGGCGCTGGCTGCCATGACAGTCCCTCTGGAAGTCGCAGTCGAGTGTCTGACCCTGAGAGACGGTCGGCGTGGGAATGAGCTGCTGAGGGACCCTGTGGAGGCGGAGCTGAAGAAGGAGGTGGAAGTGACTGAGGGGACACAGCAAGCACTGCAGCAAAAAGTCAGCCAGGCCTTTGCGCAGctgtgTTTACTGCAGGAAGCGTGGCAGcagctgacctttgacctgcaGAACAAGGCAGAGGCCCTTGAGGTGGAGCAGAGCTGCCTGTCACTCACTGAGACATCCCCCCACATCTCCCTGAAGCCAAACCCCCTCCGTGTCCCCAGTGGTTCCACATCCCCCCAGCAGTGGGAGCAGTTCAGCCAGTACAGTCGCAGTCGTGCGCAGGAGGAGGTGCGAGCGGCTGCACGGCTCCGTGAGACAATGCGCATTAGCATCGCCCAGGTTCTGAACGAGTTAGAGGCCCAGCGTGTAACTACAGACTTTGCCCTCCGGAAACAAAGTCACGAGCTGGAGAGAGCCCGAGGCGAGCTCCTGTGGCAGCATAAGACGGTGCAGTATGGACTGGTAGATGAGGTCAAGCAGCTAGAAGCCACAATAGCTGTACTGAAGCAGAAACTGGCCCAGTCTCAGCGTGCGCTCCAGGCCCTGCAGCAGCAACTGTCCCACATTGTTGAGGATCTGTCCCGCAAGACTGACGCTCTGTCCCTGGAGAGACGCAGCCTAGAGGTGCGTGGTAGGCTAGCCACCCCTCCCAAGAGGCTGCAAGAGAGTGCTGCCCCCCGCATCAGCTCCACCAGGGCCAGC

Function

GO: NA

KEGG:

id description
K18629 TEKT2; tektin-2

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00011142 True 1110 mRNA 0.59 8 12143862 12148439

Neighbor

gene id symbol gene type direction distance location
AMCG00011134 NA coding upstream 93282 12045035 ~ 12050580 (+)
AMCG00011133 NA coding upstream 105489 12034297 ~ 12038373 (+)
AMCG00011120 ppt1,LOC107696568,LOC107591677,LOC107697049,LOC107706207,LOC107589449 coding upstream 154950 11986862 ~ 11988912 (+)
AMCG00011121 eef1a1l2,LOC107589444,LOC107706209,LOC105892153,LOC105027913 coding upstream 176867 11962398 ~ 11966995 (+)
AMCG00011122 NA coding upstream 197861 11943599 ~ 11946001 (+)
AMCG00011146 NA coding downstream 136433 12284872 ~ 12300928 (+)
AMCG00011147 dock2 coding downstream 165045 12313484 ~ 12322097 (+)
AMCG00011143 etf1,etf1b,LOC108437808 coding downstream 177658 12326097 ~ 12332753 (+)
AMCG00011145 fbxw11,LOC105905987,LOC106603254,LOC108277126 coding downstream 186638 12335077 ~ 12345218 (+)
AMCG00011148 fgf18a,LOC107747128,LOC107596396,LOC107660900 coding downstream 218558 12366997 ~ 12375038 (+)
G104512 NA non-coding upstream 165497 11977236 ~ 11978365 (+)
G104477 NA non-coding upstream 194150 11948240 ~ 11949712 (+)
G104489 NA non-coding upstream 211576 11930208 ~ 11932286 (+)
G104488 NA non-coding upstream 213848 11929213 ~ 11930014 (+)
G104483 NA non-coding upstream 222665 11919874 ~ 11921197 (+)
G104596 NA non-coding downstream 2926 12151365 ~ 12151633 (+)
G104603 NA non-coding downstream 101820 12250259 ~ 12254820 (+)
G104609 NA non-coding downstream 111173 12259612 ~ 12259861 (+)
G104627 NA non-coding downstream 184889 12333328 ~ 12334214 (+)
G104666 NA non-coding downstream 281057 12429496 ~ 12434556 (+)
AMCG00011141 LOC567622,LOC108413244,LOC103367052,LOC101466533,LOC107379323 other upstream 3397 12067451 ~ 12140465 (+)
G104550 NA other upstream 76525 12066494 ~ 12067337 (+)
G104435 NA other upstream 299773 11842129 ~ 11844089 (+)
AMCG00011115 NA other upstream 333040 11808846 ~ 11810822 (+)
G104382 NA other upstream 472522 11666198 ~ 11671340 (+)
G104694 NA other downstream 376921 12525360 ~ 12527031 (+)
G104719 NA other downstream 461690 12610129 ~ 12619055 (+)
AMCG00011163 reep2,LOC107557670,LOC107588406 other downstream 521937 12670376 ~ 12679429 (+)
G104815 slc23a1,pwwp2a,LOC106603911,LOC102781148 other downstream 793941 12942380 ~ 12943082 (+)
AMCG00011204 NA other downstream 1719898 13868337 ~ 13878282 (+)

Expression


Co-expression Network