AMCG00011154


Basic Information

Item Value
gene id AMCG00011154
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 12505814 ~ 12507945 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00011154
ATGACCTCGTTTGCGGACCCCCCTCAGGGCCTGTCTCCCCCCCGCTGCAGCCCCCAGTTCCCCAGCCTGGGCCAGGAGCCGCCCGAGCTGGGCCTGTACAGCGACAGCTATTACCACCCCCCTGGGCTGCCCAGCCCCCCCCGCGGGCCCCCTGCCCCCGCTCCCCCCTACGACCTGGGACCTGACTACAGTGCCGGCTCTGCCAACCCCTATCTGTGGTTCAACAGCCCTGGGCTCAGCGGCGCCCCCTACCTGCCAGGGGCCAACCCCTCTTCGCCCTTCATGCCCCAGCACTACGGGGTTCAGAGATCGTACCTGGGAGGGGGACCGGTGGCGGGGGGTAAGGGCAACTACTGGACTCTGGACCCCAACTGTGAGAAGATGTTCGACAACGGCAACTTCCGCCgtaagaggaagaggaagtctGACTGCGGCCCCAGCGAGGCGGGGACGGGGGTGGCGCTCAGCTCGGAGTCCAGGGAGAGCACAAATGGCAGCAGCAGTGGCGGGGGTGTGGCGgtggcaggaggaggagggggggagggtgGCAGCCCTAAGGCACCCAACTCCCTGCTTGACATGAGTGACCCCAGTATGACTCCTGAGAGAGgcccctccccttcccctggAGGCCCCTCCCCCTGCCTCAGCAGCTTCCTGTTGGGGATGAGCAGCGtagcgggaggaggaggaggaggaggagaaggcggagcaggagcaggaggggagGCCCTGAGCCGTGCGTTGTCCCTGGGGCTGACTGGAGAGGGGCCCCCTCGCACTGCCCTGACCCCCAGCGGCTACAGCCCCTACTCCCCCAGCCCCCTGTCCTCCCTGCCGGACTGGAATGCCCCCTTGCCGCCCCCACCACACCCCCCCCAGCACCTCCACCACCTCCACCCTGTTCACTCGCtttcctccacctcctccccccCGCcaccctcttcctcctcctccacctcttcctcctcctcctcattgGGCTACAGCAGCTCCCTGCTCAGTCAGTTCAGCAGCCACTTCTACCCCAGCCTGGGGGGGAGCAGCAGCGGAGGGGGAGTTGGCCTGGGCACGGGGAGCCTGCTGTACCCACGCGAGGGCACCGAGGtgtag

Function

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0009957 epidermal cell fate specification biological_process
GO:0003677 DNA binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00011154 True 1113 mRNA 0.68 2 12505814 12507945

Neighbor

gene id symbol gene type direction distance location
AMCG00011159 NA coding downstream 6715 12497347 ~ 12499099 (-)
AMCG00011151 NA coding downstream 103744 12388263 ~ 12402070 (-)
AMCG00011149 NA coding downstream 199607 12300785 ~ 12306207 (-)
AMCG00011150 NA coding downstream 230265 12265507 ~ 12275549 (-)
AMCG00011136 NA coding downstream 420386 12071667 ~ 12085428 (-)
AMCG00011157 nhp2,LOC107673822,LOC107590037,LOC107684699,LOC107715316,LOC106603897 coding upstream 2879 12510824 ~ 12527131 (-)
AMCG00011156 NA coding upstream 21885 12529830 ~ 12541377 (-)
AMCG00011155 cdc23,LOC107692994,LOC106603039 coding upstream 43263 12551208 ~ 12556643 (-)
AMCG00011166 NA coding upstream 74160 12582105 ~ 12595413 (-)
AMCG00011167 NA coding upstream 88189 12596134 ~ 12605644 (-)
G104680 NA non-coding downstream 12713 12429965 ~ 12493101 (-)
G104665 NA non-coding downstream 103250 12402364 ~ 12402564 (-)
G104660 NA non-coding downstream 126147 12375067 ~ 12379667 (-)
G104598 NA non-coding downstream 349083 12156442 ~ 12156731 (-)
G104591 NA non-coding downstream 363799 12135968 ~ 12142015 (-)
G104697 NA non-coding upstream 15892 12523837 ~ 12524358 (-)
G104776 NA non-coding upstream 253100 12761045 ~ 12763667 (-)
G104845 NA non-coding upstream 420727 12928672 ~ 12931083 (-)
G104846 NA non-coding upstream 427537 12935482 ~ 12940160 (-)
G104915 NA non-coding upstream 868188 13376133 ~ 13376997 (-)
AMCG00011152 kcnip1 other downstream 48487 12427993 ~ 12457327 (-)
G104629 LOC100194717,LOC107660902,LOC107754487,LOC107655673 other downstream 177532 12326097 ~ 12328282 (-)
AMCG00011135 NA other downstream 436735 12066495 ~ 12069079 (-)
AMCG00011140 NA other downstream 508028 11990829 ~ 11997786 (-)
AMCG00011125 eef1a1l2,LOC107589444,LOC107706209,LOC107654701,LOC100136525,LOC105027913 other downstream 534812 11959238 ~ 11971002 (-)
G104715 NA other upstream 40344 12548289 ~ 12548993 (-)
G104749 NA other upstream 126911 12634856 ~ 12640227 (-)
AMCG00011169 NA other upstream 313080 12821025 ~ 12826880 (-)
AMCG00011174 slc23a1,pwwp2a,LOC106603911,LOC102781148 other upstream 434445 12942390 ~ 12956267 (-)
G104909 NA other upstream 857138 13365083 ~ 13367074 (-)

Expression


Co-expression Network