AMCG00011169


Basic Information

Item Value
gene id AMCG00011169
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 12821025 ~ 12826880 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00011169
ATGTGGACGCTGAGATCAAAAGCAAAGGGAGGAGACAGACGAAAAGCCAGGGTGTGCGGGCGCGTCTTCCCCGGCCAGAGATTGGAGACTGGGGGCAAACTGGGGCGCTCTGGCCTGGTCTCTCCAAGGGCAGCTGAGGCTCAAGAGACGCTGGGTGTGCACAGCTCCACAGACAGCAAAACAGAGTCTACAGAACAGGGTGGCATGCCATTCACCCCCATCGTGCTCGTAGGTGTTCTGGTGGTGGTGCTGACCTCGCTCGCCGTGGTGTTTCTCCTGCTGTacaaaagaaaaaaatctcaaGGGAATTCCAAAATGGGCCATGTCTCGATTCCGGAGCTGGAGAACCGGGTGGCGGTGGAGGAGAACATTTACAACGAACACATGCCAGCCGACTACGAGGTCTGCCCCTGACCTCACCCAGAGGGGGCACACTGGGGAACTGTTACCCGCCCATCTTAACCCGTAGGAAAGACAGTGCCAAAGTCACATTATCACTGAGAAACTGGTGATATGTATTATGTAGATTTTACAACTGTACTGTGCAGTTCTCATGGAATCTAGGAAGTCTAATAAGAAGAGAATCCACTTCCTTGGTCAAGGCAGAAAGCAATGGACTTCCTCTCAGTTTTGTACGTCGTGTTATTAATGTATCGCTATTAActactgacaaaaacaaaatattaagatgAGAGAATGTTTCCTCTCTGAGCAATGCAGAGGCGGGTGCTTTTGTTGAGCATTGTCTTGGTATCGGCCTGGTATCGGCCTGGTATCTAACCCGCCGCCAGTGTGGCAGGACTGTAGGATTTCTCCACACCCCATTCTTTTCTCTTCTGTACCGATTCACAGCTTAGCCCTGTCCTGTATGCCATGAGATCAATGATTCTGACTTCACTAACACTAAcgttttctgttgctgtgtgcAGCAGCACTCTGAGACCCTGCCAGAACGAACTGAATGTATTCACGCTTGCATCAACCCTTCAGTTGTTTTCACTCGTCTCTGAGGGGAAGACACACAGTTTTAAAACACTTACTTATCTGACTGGTTTAGGTGGCGCTGTGAGATGAAGGATGGTAATCTCGATGGGCTTAATATTCATCTCCCTTGCAATGGGTACATGTGtgcattaaatgaaatgcaaagatAACAGCGCCCGATTCCAGTTCTGTGGTACAAGAGGCTAAGCAGAGACAGGGTGATGCTCCagattattattagatttttaagtgtaaatataatattgtaatatgtgTGCATGTTCTGTTACAGTGAGTGTGTTTGCTGTGCTATACACTTCACCCACAGCATACTTCAGcgacacatatacatattaccAGAGATCAAACCAAGCAGGAAGTGAATCAGCagaatataaaagtatataaaactaaaaaactgaaaaatgaagcAAGTGCTATCTCTCATCCTTGCAAATGGTCTTGGCCTGTAAAGGTCACATCCCCTCTGTGTGTCACACGCTGCTGGAGTGCAGAAAGAGCCTGTGACTCACCCCCCGGTCGCCCCCGTCTCCCCTCCCTCGCCTGGTCTTCTACCAATCACAACGTTGCTtcaattattattgattatcaGAAGGCACTTTCtacactgtattaaaaaacaacaacctgatAAAGTTCAGGGGGTTTAATGCTCAGTATTGTTACACTGGAAGATTTTTTactcatgtttgtttttaaaagggtcTTTGGGAAGTGAAGACCATtgtgttgtatatattttaataaaatgtactttgataATCA
>TU131049
NNNGGCTGGTTTAATGACCTGAAACATCATTTTCACTTGACTGTTGCACAGGGTACACCTGCCTCGTCTCCCAATGTCCCCGAGCCCTGGACAAGCCCTGCTGATGGACACACTGCAAGTGTGCACAGCTCCACAGACAGCAAAACAGAGTCTACAGAACAGGGTGGCATGCCATTCACCCCCATCGTGCTCGTAGGTGTTCTGGTGGTGGTGCTGACCTCGCTCGCCGTGGTGTTTCTCCTGCTGTacaaaagaaaaaaatctcaaGGGAATTCCAAAATGGGCCATGTCTCGATTCCGGAGCTGGAGAACCGGGTGGCGGTGGAGGAGAACATTTACAACGAACACATGCCAGCCGACTACGAGGTCTGCCCCTGACCTCACCCAGAGGGGGCACACTGGGGAACTGTTACCCGCCCATCTTAACCCGTAGGAAAGACAGTGCCAAAGTCACATTATCACTGAGAAACTGGTGATATGTATTATGTAGATTTTACAACTGTACTGTGCAGTTCTCATGGAATCTAGGAAGTCTAATAAGAAGAGAATCCACTTCCTTGGTCAAGGCAGAAAGCAATGGACTTCCTCTCAGTTTTGTACGTCGTGTTATTAATGTATCGCTATTAActactgacaaaaacaaaatattaagatgAGAGAATGTTTCCTCTCTGAGCAATGCAGAGGCGGGTGCTTTTGTTGAGCATTGTCTTGGTATCGGCCTGGTATCGGCCTGGTATCTAACCCGCCGCCAGTGTGGCAGGACTGTAGGATTTCTCCACACCCCATTCTTTTCTCTTCTGTACCGATTCACAGCTTAGCCCTGTCCTGTATGCCATGAGATCAATGATTCTGACTTCACTAACACTAAcgttttctgttgctgtgtgcAGCAGCACTCTGAGACCCTGCCAGAACGAACTGAATGTATTCACGCTTGCATCAACCCTTCAGTTGTTTTCACTCGTCTCTGAGGGGAAGACACACAGTTTTAAAACACTTACTTATCTGACTGGTTTAGGTGGCGCTGTGAGATGAAGGATGGTAATCTCGATGGGCTTAATATTCATCTCCCTTGCAATGGGTACATGTGtgcattaaatgaaatgcaaagatAACAGCGCCCGATTCCAGTTCTGTGGTACAAGAGGCTAAGCAGAGACAGGGTGATGCTCCagattattattagatttttaagtgtaaatataatattgtaatatgtgTGCATGTTCTGTTACAGTGAGTGTGTTTGCTGTGCTATACACTTCACCCACAGCATACTTCAGcgacacatatacatattaccAGAGATCAAACCAAGCAGGAAGTGAATCAGCagaatataaaagtatataaaactaaaaaactgaaaaatgaagcAAGTGCTATCTCTCATCCTTGCAAATGGTCTTGGCCTGTAAAGGTCACATCCCCTCTGTGTGTCACACGCTGCTGGAGTGCAGAAAGAGCCTGTGACTCACCCCCCGGTCGCCCCCGTCTCCCCTCCCTCGCCTGGTCTTCTACCAATCACAACGTTGCTtcaattattattgattatcaGAAGGCACTTTCtacactgtattaaaaaacaacaacctgatAAAGTTCAGGGGGTTTAATGCTCAGTATTGTTACACTGGAAGATTTTTTactcatgtttgtttttaaaagggtcTTTGGGAAGTG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00011169 True 1770 mRNA 0.46 5 12821025 12826880
TU131049 False 1686 lncRNA 0.45 6 12821073 12825491

Neighbor

gene id symbol gene type direction distance location
AMCG00011170 NA coding downstream 1681 12815427 ~ 12819344 (-)
AMCG00011167 NA coding downstream 215381 12596134 ~ 12605644 (-)
AMCG00011166 NA coding downstream 225612 12582105 ~ 12595413 (-)
AMCG00011155 cdc23,LOC107692994,LOC106603039 coding downstream 264382 12551208 ~ 12556643 (-)
AMCG00011156 NA coding downstream 279648 12529830 ~ 12541377 (-)
AMCG00011173 NA coding upstream 139657 12966537 ~ 12984196 (-)
AMCG00011175 NA coding upstream 158505 12985385 ~ 12986581 (-)
AMCG00011178 slu7,LOC107741361,LOC107550887,LOC107756482,LOC107680665,LOC107676532,LOC107601502 coding upstream 161769 12988649 ~ 12999288 (-)
AMCG00011180 NA coding upstream 177658 13004538 ~ 13013351 (-)
AMCG00011179 NA coding upstream 193026 13019906 ~ 13034119 (-)
G104776 NA non-coding downstream 57358 12761045 ~ 12763667 (-)
G104697 NA non-coding downstream 296667 12523837 ~ 12524358 (-)
G104680 NA non-coding downstream 327924 12429965 ~ 12493101 (-)
G104665 NA non-coding downstream 418461 12402364 ~ 12402564 (-)
G104660 NA non-coding downstream 441358 12375067 ~ 12379667 (-)
G104845 NA non-coding upstream 101792 12928672 ~ 12931083 (-)
G104846 NA non-coding upstream 108602 12935482 ~ 12940160 (-)
G104915 NA non-coding upstream 549253 13376133 ~ 13376997 (-)
G104916 NA non-coding upstream 551177 13378057 ~ 13378299 (-)
G104921 NA non-coding upstream 726560 13553440 ~ 13555074 (-)
G104749 NA other downstream 180798 12634856 ~ 12640227 (-)
G104715 NA other downstream 272032 12548289 ~ 12548993 (-)
AMCG00011152 kcnip1 other downstream 363698 12427993 ~ 12457327 (-)
G104629 LOC100194717,LOC107660902,LOC107754487,LOC107655673 other downstream 492743 12326097 ~ 12328282 (-)
AMCG00011135 NA other downstream 751946 12066495 ~ 12069079 (-)
AMCG00011174 slc23a1,pwwp2a,LOC106603911,LOC102781148 other upstream 115510 12942390 ~ 12956267 (-)
G104909 NA other upstream 538203 13365083 ~ 13367074 (-)
G104929 NA other upstream 838915 13665795 ~ 13679262 (-)
AMCG00011211 NA other upstream 1167103 13993983 ~ 13996589 (-)
G105050 NA other upstream 1240335 14067215 ~ 14068561 (-)

Expression


Co-expression Network