AMCG00011171


Basic Information

Item Value
gene id AMCG00011171
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 12918054 ~ 12927962 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00011171
CCCAATGATTCGCCGCGGAGGCCGGAAGTGCTGTTAGAAAGTGAACAGTGGGGCTGGCTGTTACCAGAGGGGAGCTTGCCAATGGAGTCTGCAGTGGAGGAGAGCCCCAGTGACCAGGAGCAGCTGCCCCAGGCTCTGGACCGCACTGCAGGCCTGTCTGATACCCACCAGGGGGGCCCGGACTGCAGCCCTGCCCCTGAGCCAGAGGAGGAGTGCTTCTTCGACTGTGAGGAGTCCCTGGAGGAGAGGAGGACGGGAGAGAGCAGTATGGGTGGCCCAGCAGGGAGCGAGCGTGGGACGGAAGGAGACGGAGAGCGAGAGGACAGCGAAGACGGAACAGGGAGCGAAGACGGAGAGGATGGAGAGGACCCGGACAGGGAACAGACTGAGGGGCAGGGAACAGGGGAGGTAGACGGGAGGAGAGAGCGGCCGAGGGAgcgggaggaggaggcagagagatggGAAGAGTGCGCCGagggaggagacagaggggcggAGGGGGGCGAGGAGGAGGACTTGGagctgaaggaggaggagacCCCCGAATTTGACGAGGAGTGCCTGAGGGAGCTGGAGAAAGAGCTGacggaggaggagagagagggcaggagagaggagagcaggaGGCTAAAGGAACGAGGGAATGAACAGTTCAAGAGTGGAGAGCACTGCGAGGCGGAGGAGGCCTACACCGCAGCGCTGCACACCTGCCCCGCCAGCTACAGCGCTGACAGAGCCATCCTGTTCTCCAACCGGGCGGCGGCTCGCATGAAACTGGATAAGAAGGAGAAGGCCATAGCGGATTGCACTAGAGCCCTGGAGCTGAACCCCGAGTACCTGCGTGCGCGACTGCGCAGGGCGGAGCTGTACGAGAGGACTGACAAGCTGGACGAGGCCCTGGAGGACTACACGGCCGTGCTGGAGAGGGACCCGTCCGTCGGCCAGGCCAGGGAGGCCTGCGCGCGCTTGCCCAAGCAGATTGAGGAGAGGAACGAGAAAATGAAAGAGGAGATGTTGAGCAAGCTGAAGGACCTGGGGAACATGTTCCTGCGACCTTTCGGCCTCTCCACAGAGAACTTCCAGGTCAACcaggacaacagcagtggaTCCTACTCCATCAACTTTGTCCAGAaccccaacaacaacagatAGCATTGCAGGGGACGGGGCGGGGGGGGCATCTGCTCCcctaaataaacatgttaaatagACTCATCAACTGACGCTGAGAATGTCTTAGACACCATAGAGAGAAATTGTTTTAAGGTTTGAAGcttcaattattgtttttttgttttgttttagtttttcaataaAGCAAACACACGGTCTGTCCCCTCCCCCTTTATGTTGTTGCTGTAAGTTTAAATAAGCGTACAGCTAAAAGGAGAAACCAGAGAGAGGGGC

Function

GO: NA

KEGG:

id description
K24926 TTC1; tetratricopeptide repeat protein 1

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00011171 True 1407 mRNA 0.58 8 12918054 12927962

Neighbor

gene id symbol gene type direction distance location
AMCG00011176 NA coding upstream 2983 12901039 ~ 12915071 (+)
AMCG00011168 NA coding upstream 155738 12759630 ~ 12762316 (+)
AMCG00011161 NA coding upstream 253077 12649660 ~ 12664977 (+)
AMCG00011162 NA coding upstream 271104 12643685 ~ 12646950 (+)
AMCG00011164 LOC106604922 coding upstream 282936 12623686 ~ 12635118 (+)
AMCG00011172 NA coding downstream 32251 12960213 ~ 12961785 (+)
AMCG00011177 NA coding downstream 71572 12999534 ~ 13004427 (+)
AMCG00011181 NA coding downstream 228289 13156251 ~ 13169149 (+)
AMCG00011184 NA coding downstream 262817 13190779 ~ 13215914 (+)
AMCG00011187 ubtd2,LOC107672801,LOC107718046,LOC108279301 coding downstream 357335 13285297 ~ 13314709 (+)
G104800 NA non-coding upstream 86774 12830849 ~ 12831280 (+)
G104709 NA non-coding upstream 366190 12551040 ~ 12551864 (+)
G104666 NA non-coding upstream 483498 12429496 ~ 12434556 (+)
G104627 NA non-coding upstream 583840 12333328 ~ 12334214 (+)
G104609 NA non-coding upstream 658193 12259612 ~ 12259861 (+)
G104814 NA non-coding downstream 7474 12935436 ~ 12940170 (+)
G104835 NA non-coding downstream 90830 13018792 ~ 13019064 (+)
G104883 NA non-coding downstream 258986 13186948 ~ 13229416 (+)
G104910 NA non-coding downstream 625439 13553401 ~ 13555056 (+)
G104923 NA non-coding downstream 737985 13665947 ~ 13679380 (+)
AMCG00011163 reep2,LOC107557670,LOC107588406 other upstream 238625 12670376 ~ 12679429 (+)
G104719 NA other upstream 298999 12610129 ~ 12619055 (+)
G104694 NA other upstream 391023 12525360 ~ 12527031 (+)
AMCG00011141 LOC567622,LOC108413244,LOC103367052,LOC101466533,LOC107379323 other upstream 777589 12067451 ~ 12140465 (+)
G104550 NA other upstream 850717 12066494 ~ 12067337 (+)
G104815 slc23a1,pwwp2a,LOC106603911,LOC102781148 other downstream 14418 12942380 ~ 12943082 (+)
AMCG00011204 NA other downstream 940375 13868337 ~ 13878282 (+)
AMCG00011210 bod1,LOC107581912,LOC107661728,LOC107713186,LOC107662284,LOC107587245,LOC108278584,LOC106603873 other downstream 1057703 13985665 ~ 13992845 (+)
AMCG00011209 cpeb4,LOC106603870 other downstream 1085159 14013121 ~ 14061027 (+)
G105139 LOC100846954 other downstream 1691728 14619690 ~ 14620534 (+)

Expression


Co-expression Network