AMCG00011172


Basic Information

Item Value
gene id AMCG00011172
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 12960213 ~ 12961785 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00011172
TTTCTGACTCCAGCCGGCAGCTCCTCTCTCCTCACTCTCTCGAACCCGTGCAGCACTGCCCTGACGCCATGGCCTTTACTGGGAAGTATGAGATCGAAAGCCAGGAGAACTACGATGAATTCCTCAAGCTGATCGGGATTCCCGATGATGTCATCGAGAAGGGGCGCAACTTCCGCATTGTGACGGAGGTGGAGCAGAACGGCAACGAGTTCACCTGGTCGCAGGTGTACCCCAGTAAAACCATGACCAACAAGTTCACCATCGACCAGGAGAGCGAAATGGAGACCATGGCTGGCAAGAAGTTCAAGGCCACTGTCACCATGGAGGGGGGCAAGATTACGGTTCGCTTCCCTAAGTACCACCACACAGCAGAGATCTCTGGAGGCAAACTGGTCGAGTGCTCTACTGCCAGTGGCGCCAAGGGCACCGTGACCATGAAGAGGATCAGCAAGAAGATCTAACCCAGCCGAGCCCAGCTGTGTCCCCCTGccagaaaacaacagcaataaaaatacTTT

Function

GO:

id name namespace
GO:0006810 transport biological_process
GO:0032052 bile acid binding molecular_function
GO:0005215 transporter activity molecular_function

KEGG:

id description
K08755 FABP6; fatty acid-binding protein 6, ileal (gastrotropin)

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00011172 True 518 mRNA 0.54 4 12960213 12961785

Neighbor

gene id symbol gene type direction distance location
AMCG00011171 NA coding upstream 32251 12918054 ~ 12927962 (+)
AMCG00011176 NA coding upstream 45142 12901039 ~ 12915071 (+)
AMCG00011168 NA coding upstream 197897 12759630 ~ 12762316 (+)
AMCG00011161 NA coding upstream 295236 12649660 ~ 12664977 (+)
AMCG00011162 NA coding upstream 313263 12643685 ~ 12646950 (+)
AMCG00011177 NA coding downstream 37749 12999534 ~ 13004427 (+)
AMCG00011181 NA coding downstream 194466 13156251 ~ 13169149 (+)
AMCG00011184 NA coding downstream 228994 13190779 ~ 13215914 (+)
AMCG00011187 ubtd2,LOC107672801,LOC107718046,LOC108279301 coding downstream 323512 13285297 ~ 13314709 (+)
AMCG00011186 NA coding downstream 366597 13328382 ~ 13330598 (+)
G104814 NA non-coding upstream 20043 12935436 ~ 12940170 (+)
G104800 NA non-coding upstream 128933 12830849 ~ 12831280 (+)
G104709 NA non-coding upstream 408349 12551040 ~ 12551864 (+)
G104666 NA non-coding upstream 525657 12429496 ~ 12434556 (+)
G104627 NA non-coding upstream 625999 12333328 ~ 12334214 (+)
G104835 NA non-coding downstream 57007 13018792 ~ 13019064 (+)
G104883 NA non-coding downstream 225163 13186948 ~ 13229416 (+)
G104910 NA non-coding downstream 591616 13553401 ~ 13555056 (+)
G104923 NA non-coding downstream 704162 13665947 ~ 13679380 (+)
G104979 NA non-coding downstream 896046 13857831 ~ 13858192 (+)
G104815 slc23a1,pwwp2a,LOC106603911,LOC102781148 other upstream 17131 12942380 ~ 12943082 (+)
AMCG00011163 reep2,LOC107557670,LOC107588406 other upstream 280784 12670376 ~ 12679429 (+)
G104719 NA other upstream 341158 12610129 ~ 12619055 (+)
G104694 NA other upstream 433182 12525360 ~ 12527031 (+)
AMCG00011141 LOC567622,LOC108413244,LOC103367052,LOC101466533,LOC107379323 other upstream 819748 12067451 ~ 12140465 (+)
AMCG00011204 NA other downstream 906552 13868337 ~ 13878282 (+)
AMCG00011210 bod1,LOC107581912,LOC107661728,LOC107713186,LOC107662284,LOC107587245,LOC108278584,LOC106603873 other downstream 1023880 13985665 ~ 13992845 (+)
AMCG00011209 cpeb4,LOC106603870 other downstream 1051336 14013121 ~ 14061027 (+)
G105139 LOC100846954 other downstream 1657905 14619690 ~ 14620534 (+)
AMCG00011241 LOC102221627,LOC107740141,LOC107680337,LOC107593202 other downstream 2358995 15320780 ~ 15322658 (+)

Expression


Co-expression Network