AMCG00011176


Basic Information

Item Value
gene id AMCG00011176
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 12901039 ~ 12915071 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00011176
ATGAACCTGGACAATAGGGGTGCAGCTGGCTTCGGGGACAACGGGACCTCTGCGTGGTTGGCACCGTCCAACGAGGTCCCCTTCGGAAACATCTCAAATGCGACCTCGGGCAACGAGACAACCCCGCTGGACGTGGCGAGGGCGGCCACTCTGGGCATCGTGCTGGGGGCGTTCATCGTGTTCGCCATCGTGGGCAACATCTTGGTCATCCTGTCCGTGGTGTGCAACAGGCACCTGCGCACCCCTACCAACTACTTCATCGTCAACCTGGCCATCGCCGACCTGCTGCTGGGCACCACGGTGCTGCCGGTCTCCGCCACCCTGGAGATCGTGGACCACTGGGTGTTCGGGCGTATCTTCTGCGACCTGTGGGCGGCGGTGGACGTGCTCTGCTGCACCGCGTCCATCATGAGCCTGTGCGTGATCTCCATCGACCGGTACATCGGGGTGCGCCACTCGCTGCAGTACCCGGCCATCGTGACCGAGGGCAGAGCCGCGCTGGCCCTGGTCGGGGTGTGGGTGCTGTCGGTGGTCATCTCCATCGGCCCCTTGCTGGGGTGGAAGCAGCCGGTCCCCCCGGACGAGAAGGTGTGCGTCATCACCGAGGAGCCCTTCTACACACTGTTCTCCTCCCTGGGCTCCTTCTACATCCCCCTGGCCGTCATCCTGGCCATGTACTGCCGGGTTTACATCGTGGCCAAGCGGACCACCAAGAACCTGGAGGCCGGCGTGATGAAGGAGAGGTCGGACTCCAAGGAGTTCACACTGCGGATCCACTGCCGGGGCTCGCAGGCTCATGAGGAGGGCGCCGCGCACAGCAGAGCCCGGGCTGCCCACGGCCGGAGCTCCCTGACCGTCCGGCTGCTCAAGTTCTCCCGGGAGAAGAAAGCGGCCAAGACCCTGGGCATCGTAGTGGGCATGTTCATCCTGTGCTGGCTGCCCTTCTTCCTCGCCTTGCCGATCGGTTCCTTCAACAGACACCTGCGGGCCCCTGATACCCTTTTCAAGGTGATCTTCTGGCTGGGCTACTTCAACAGCTGCCTGAACCCCATCATCTACCCCTGCTCCAGCAAGGAGTTCAAGCGGGCCTTCATCCGCATCCTCCGCTGCCAGTGCCGCCGCAGGAAGCGCCCGGGCTGGAAGGCCTACGATTACCGCAGCTCCCACCTCAGCTCCTCCGACCACTCCCGCAAGGACTCCATGGACGACGGTTCCCTGTTCCTCAACGGCAGCCATCCGACGCTCCCCTCCTCCGCCCAGCCCAGCCCCAGCTACCTGTCCGAGGGGCCCCCTCAGCAGCACCTGCAGCTGGGGTCCCTCTACAGCTGGAGGCCCCacgccccctcctcctccacctgcaGCCCCTCAGACAGCATGCTGCGGCCACTGACGGGGCATCACAGGTTCTTCTTCGGGGGCGGGGCAGTGGTGACTGGGGGCCTCATTGAGCACAACGGGATCAGCTCGACGAGCCCTGCACTAAGAAGCGGCACCCCGTACAGCTTCAGCCTGAGCGTGTGCGACGGACAACACCAAACTCTCCCTTTCTCCAACGGGGGCGGCGAGGCGGGGAAGGCGCAGCCCGAGGACCAGGAACAGGGCTGGGACTCGGACGCACAAGAACAGGAGGACACCGCGTCCCTGGAGGACTGGGGCATGGCACCCCTGGGGTACGTTCTCCCGTGGCGTGACAGGCGTTACCCAGCTCTGTGGGGGCTCTGTGGGAGTCACTGA

Function

GO: NA

KEGG:

id description
K04136 ADRA1B; adrenergic receptor alpha-1B

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00011176 True 1734 mRNA 0.65 3 12901039 12915071

Neighbor

gene id symbol gene type direction distance location
AMCG00011168 NA coding upstream 138723 12759630 ~ 12762316 (+)
AMCG00011161 NA coding upstream 236062 12649660 ~ 12664977 (+)
AMCG00011162 NA coding upstream 254089 12643685 ~ 12646950 (+)
AMCG00011164 LOC106604922 coding upstream 265921 12623686 ~ 12635118 (+)
AMCG00011165 NA coding upstream 279802 12619124 ~ 12621237 (+)
AMCG00011171 NA coding downstream 2983 12918054 ~ 12927962 (+)
AMCG00011172 NA coding downstream 45142 12960213 ~ 12961785 (+)
AMCG00011177 NA coding downstream 84463 12999534 ~ 13004427 (+)
AMCG00011181 NA coding downstream 241180 13156251 ~ 13169149 (+)
AMCG00011184 NA coding downstream 275708 13190779 ~ 13215914 (+)
G104800 NA non-coding upstream 69759 12830849 ~ 12831280 (+)
G104709 NA non-coding upstream 349175 12551040 ~ 12551864 (+)
G104666 NA non-coding upstream 466483 12429496 ~ 12434556 (+)
G104627 NA non-coding upstream 566825 12333328 ~ 12334214 (+)
G104609 NA non-coding upstream 641178 12259612 ~ 12259861 (+)
G104814 NA non-coding downstream 20365 12935436 ~ 12940170 (+)
G104835 NA non-coding downstream 103721 13018792 ~ 13019064 (+)
G104883 NA non-coding downstream 271877 13186948 ~ 13229416 (+)
G104910 NA non-coding downstream 638330 13553401 ~ 13555056 (+)
G104923 NA non-coding downstream 750876 13665947 ~ 13679380 (+)
AMCG00011163 reep2,LOC107557670,LOC107588406 other upstream 221610 12670376 ~ 12679429 (+)
G104719 NA other upstream 281984 12610129 ~ 12619055 (+)
G104694 NA other upstream 374008 12525360 ~ 12527031 (+)
AMCG00011141 LOC567622,LOC108413244,LOC103367052,LOC101466533,LOC107379323 other upstream 760574 12067451 ~ 12140465 (+)
G104550 NA other upstream 833702 12066494 ~ 12067337 (+)
G104815 slc23a1,pwwp2a,LOC106603911,LOC102781148 other downstream 27309 12942380 ~ 12943082 (+)
AMCG00011204 NA other downstream 953266 13868337 ~ 13878282 (+)
AMCG00011210 bod1,LOC107581912,LOC107661728,LOC107713186,LOC107662284,LOC107587245,LOC108278584,LOC106603873 other downstream 1070594 13985665 ~ 13992845 (+)
AMCG00011209 cpeb4,LOC106603870 other downstream 1098050 14013121 ~ 14061027 (+)
G105139 LOC100846954 other downstream 1704619 14619690 ~ 14620534 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_019011 adra1ba coding NC_007132.7 CM002905.2 29227224 ~ 29247942 (+)
grasscarp (Ctenopharyngodon idella) CI01000006_02116526_02125887 ADRA1BA, ADRA1B coding CI01000006 null 2115918 ~ 2126120 (+)