AMCG00011179


Basic Information

Item Value
gene id AMCG00011179
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 13019906 ~ 13034119 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00011179
ATGCAGCGATCTCTCTTGCCCACAGCGATGGAGCAGCTGGTGGCAGAGCTCAGTGTGCTGCTGAAGCTCCTGGACCACGAGACCCTGAGCTCCACCACGGCCGAGAAGAAGACCGCTGTCAGGAACCTGCTGAGACAGCTGCAGCCCTCTGCAGTTAATGGTGGTGATGAGGTGTACATGAACACCTCCGTCTATGGAAATGGCACCAGCTTTGTGGAGTCCCTATTCGAAGAGTTCGCAGACTGTGACCTGCGGGAGCTGAAAGATGGTGGAGAGGAGCCAAGGGAGGAGTGCGAGGAGGACGCCCCAGAGACCAGCGCTTCAAAAGCAGATTACTACGAAGAGGCCGTGCCCCTGAGCCCAGGCAAGGCCCCCCAGTACATCACCACACGCAGCAGCTCCAGCCCCCCCAACTCCATCGAGGACGGATACTACGAGGACGCCGACAACAACTACCCCATCACCAGGATGAATGGAGAGCCCAAGAACTCTTacAATGACTCTGATGCGATGAGCAGCTCCTACGAGTCCTACGACGAGGAGGACGAAGAGGGCAAGGCCCGTCGTCTGACACACCAGTGGCCATCGGAGGAGAACTCCATGGGCCTGGTGAAGGACTGCCGCATCTGTGCCTTCCTGCTCCGCAAGAAGCGCTTTGGCCAGTGGGCCAAACAGCTAACCATCATCCGGGAGAACCGCCTCCTGTGCTACAAGAGCTCCAAGGACCACACCCCTTACATGGACGTCCTCTTGCACCTGTGTAGTGTCGTCTACGTCCCCAAAGATGGCCGCCGCAAGAAACACGAGCTGCGCTTTTCCCTGCCAGCAGGGGAGTCCTTGGTGCTGGCGGTGCAGAGCAAGGAGCAGGCTGAGGGCTGGCTCAAGGTTATCAGAGAGGTCAGCAGCCAGTCAACCAGGGGGTCAGCAGTGGAGGGATCAGTCTCCCCCAACATCCTGAGGAAAACCGAGCTGGACAAGAGACTGTCAGCCGACAAACACACATCTGACTCGGATAGCGTTGTCACGGGGGACAACAGCAGCCCAGTCAACAGCAAGGAGCATGGGAAGGTGAAACGTGGCGCCCTGTCGGAACTGACAGGCTCAGTGAGCCGGGCAGCTGGTCGCAAGATCACACGTATCATCAGTTTCTCCAAGAGGAAGCCCCCCGCAGCTGGGGAGCCCAGCGGCCCATCTCCCGAGGATCTGCCCCGCTGCGGTTACCTCAGTGTGCTGGTGAGTCAGTGCTGGAAGGAGCGGTGGTGCATTGTGCGTGGTGGCACCCTGTTCCTGCACCGCGACCGTTCGGACCTGCGCACGCCAGTCAATGCCATCGCACTGCGAGGGTGCGAGGTGGTGCCCGGCCTGGGCCCCAAACACCCCTTTGCCTTCCGGCTCCTGCGCAATGCCACAGAGGTGGCAGCCCTGGAGTCTCTGCACTACGACTATGTGGATGTGGACACCATCGCCAACATTGTGGACGCCGTCAGACACTCCTTCCTGTGGGCAACCGGTGCCAGCAGCTCCCCCGCCGACTGCAGGACCTACGACGAGGTGCCCTACGAGAGAGTGCAGCCTGAGGAATCCAAGCCGGGAGCCGCAGTGAAGAGACACGCCTCTTTCAACAGCAGAGATGCCCAGAAGATCGAGTCCCAAATCAAGATCAAGCGCCACGGCTCCAggatcCGCACCCAGCTGCTGGCGCTGCGCAGACAGAGGAAGGAGCTGAAGGAGGAGCTGAAGACAGCCTCAGGCAAGAAAGCGAAGGGGCTGGAGGAGAGGCTGGCCGGCCTGGAGGAGCGCTGCCGGGAGAAGGAGGGTGCGCGGGTGGACCTAGAACTGCGGCTGACGGATGCCCAGAGCAACAGGATCGAGAGTAACGGCACAGATCACAGTATGCCTGTCAACTGCGCCTCTGAGATGCGCAAACGTCCCCCTTCCATCTACGCCTCGGGCCGCGGGAACGTCATGCAGAAAGCCAAGGAATGGGAGTCCAAGAGAGGGACCTAGGTGAGATGTTGCTCTGCGAGAGGGGTCGGCAGTGTGTCGCTGGGCTGTGATGATGGGAGGCTGCAGACagaccagacagacagacagacaggctgaccatctccctctcctcagGCCTAccgagttttttttttcctgggctGGACTAAAGCCAAGAGAGGCTCAGAACTACTCcagctaaaacaaatatttttcttataacATTAAGTCTCTGCTAAGACACAAAAACAGCCGTGAGCGAGGGCCTGGGTGAGGAGGCACAGCCTCGAGGAACACTGTACAGCACCAGTATTTATTGCACAGGCACAACTAGTGCTGCTGGGATGGCCACCCTGTTGACATCTTCAAGAACAATTCACTGTTTCTGCGTACCTGCTTCAATTGATAATAATAGAATGGATGGCAATGGTAGGAATGGTATCCCAGCAGCACCTCTCACTTCTGCTCAGAGTAGTATGTGGCCCTCCAGACGACCTTTTACTACAGCGGCCCCCGGACAAGCAAGAGCgcacagatggagagagacggagacagagagagagagttcatcGAGTTTTGGAACCAACAGGACAGACTGACGGGCCGATCGCCACACTGAAAGCTGAAGTCCTGCTCCGACAGAGGACTAACTGGATGTCGATGTAGACTACAGGACTGGTTGAGAaggggattgtgtgtgtgggcgtgtgcatgtgtgcacaCAGGAAAGGTGTAGTTTGACAAATGTACCAAAGGGAACAGAggagaaaagaagaaggaaCAGGTATCAAGGGACAAtaaggagagaagaaaaacaagacaatcagtgtttaaaaataatttaatttgtactttATATACCAATAAcaccataaaaacacaacacaaagttttgttaatatattttggttttgggTCTTTAGGTTTATACTTACACTGCAGTTTGTACCCCTTACAATGTCCAGAAACATAGTGTTTAAAAATTAACACATTCGAGGCATTGCGACGCAGCTGAATTTCTgccagaaaaagaagaaaggcaGTGCAGTGTTTCAGCAGTATGGGGCTCACAGTGGGCAAAATGCCTCCGTTATGGTCACCTGCTCCTCTCTGAGCTCCGTGGAGATTTCACAGCCCTCTCCTGTATAAAGGCACCCGTCTGTGGGCGTAGCGGGTGTGTCGCTCTGCTGGTGAGGCCATGTGGGTGATGTCACGCTGCCTCTGCTCCTGGGATAGGTGCTCACACACTCACGGCAAAGTCACACAATCCACGAGAGGAAGTTGAGGGACTAGACAACGTCACGCACAACGCATTCATTATTCcatgcttgtgtttgtttgttcattcattgtCACAAAGTAACGTGGAAGTGTGACCTTCATGATAGGAGAGACACGGACTCATTTTGCAGCACAAAAACGcagtctctttttcttttatttgggAACAGAAAAGTAATACAGCTGCATTGAggtc

Function

GO: NA

KEGG:

id description
K23782 AFAP1L; actin filament associated protein 1-like

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00011179 True 3463 mRNA 0.55 18 13019906 13034119

Neighbor

gene id symbol gene type direction distance location
AMCG00011180 NA coding downstream 6555 13004538 ~ 13013351 (-)
AMCG00011178 slu7,LOC107741361,LOC107550887,LOC107756482,LOC107680665,LOC107676532,LOC107601502 coding downstream 20618 12988649 ~ 12999288 (-)
AMCG00011175 NA coding downstream 33325 12985385 ~ 12986581 (-)
AMCG00011173 NA coding downstream 35710 12966537 ~ 12984196 (-)
AMCG00011170 NA coding downstream 200562 12815427 ~ 12819344 (-)
AMCG00011182 NA coding upstream 22614 13056733 ~ 13104555 (-)
AMCG00011183 NA coding upstream 152829 13186948 ~ 13192140 (-)
AMCG00011188 ublcp1,LOC106567438,LOC106603889,LOC107672805 coding upstream 294374 13328493 ~ 13343464 (-)
AMCG00011194 NA coding upstream 650515 13684634 ~ 13687704 (-)
AMCG00011200 NA coding upstream 709799 13743918 ~ 13745225 (-)
G104846 NA non-coding downstream 79746 12935482 ~ 12940160 (-)
G104845 NA non-coding downstream 88823 12928672 ~ 12931083 (-)
G104776 NA non-coding downstream 256239 12761045 ~ 12763667 (-)
G104697 NA non-coding downstream 495548 12523837 ~ 12524358 (-)
G104680 NA non-coding downstream 526805 12429965 ~ 12493101 (-)
G104915 NA non-coding upstream 342014 13376133 ~ 13376997 (-)
G104916 NA non-coding upstream 343938 13378057 ~ 13378299 (-)
G104921 NA non-coding upstream 519321 13553440 ~ 13555074 (-)
G104928 clint1a,LOC108441628 non-coding upstream 628067 13662186 ~ 13667716 (-)
G104998 rpl26l1,rl26,LOC105024418,LOC107381811,LOC100708525,LOC103144500 non-coding upstream 830402 13864521 ~ 13867615 (-)
AMCG00011174 slc23a1,pwwp2a,LOC106603911,LOC102781148 other downstream 63639 12942390 ~ 12956267 (-)
AMCG00011169 NA other downstream 193026 12821025 ~ 12826880 (-)
G104749 NA other downstream 379679 12634856 ~ 12640227 (-)
G104715 NA other downstream 470913 12548289 ~ 12548993 (-)
AMCG00011152 kcnip1 other downstream 562579 12427993 ~ 12457327 (-)
G104909 NA other upstream 330964 13365083 ~ 13367074 (-)
G104929 NA other upstream 631676 13665795 ~ 13679262 (-)
AMCG00011211 NA other upstream 959864 13993983 ~ 13996589 (-)
G105050 NA other upstream 1033096 14067215 ~ 14068561 (-)
G105290 LOC108429417 other upstream 2336283 15370402 ~ 15373179 (-)

Expression


Co-expression Network