AMCG00011181


Basic Information

Item Value
gene id AMCG00011181
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 13156251 ~ 13169149 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00011181
tttagtttcttcAGTATTTTATAACAAACCCAAGTTCACAAGCTAAGAGTAGTAGCCAGCTAGAgccacagaaatgtattttcaattaaaatgctttttattttttaaccttggACAGGATATTACTTATTTCAAGAGGTGTTGTGTGTTCAGTCACCTTATCTTTAAAGACACAGCCTGTTCTCTCATACCAGCTGCCTCCTGGTGTCTGCAGAGCTGGGGTTTGTTTGTCTGCATGGGGGTGTGTTTTGTTCAGTCTCTTTTTCTCAGAGTTAAGAAGAATGGCACAGGAAAAACTGAGGCAAAGCGTCGGCTGAACTGGATGCCTTGAGGACTGAACCACCCTACAGCTTGGCTGCGGCTGGCAGAGACATCGGAGGCAATGACACCATGACCACAGGGGACGAGGATGAGGCGCCGGACCCTGACCGCTCCTGGCAGTGGAAGGAGTCCCCTCTGGGAGGCAGCACGGTGTCGCTGGCGGTAGGAGAGAGATTCTCGTCAGATGTGCTGCTGGCGTACAGCGCGAGGCGGAGCTCCACAGCACTGCCTGACCCTGCCCTGCAGGAGGCGCTACGCACCAGGCTGAGAGTGGTGGAGAGCAACAGCCAAGATATCACCCGACTCTTCAAGGACCTGTCTGCCCGGCTGGTGTCTGTGCACGCCGAGAAAGACAGCTTTGTTATCACCTTCAAGACTGTCGAGGAAATCTGGAAGTTCTCCACCTACCTGGCTCTCGGTTATGTGTCTCGCTGCCTGGAGAACTTCCTCTGTGCCCCGTCGGTCTGGCTGGACTCGGCCGTGCTGCAGGAGGTGCAGATCAGCGTGACTGTGGACGAGGAGCACCTTGCTACCATGTACCTGGGGCTGCTCCTGCAGGAAGGCAAGGTGCAAAGAACAACACTAACAGgcTCCTTCTTTGCTAAAGCTCTGTTCAATAGCAACAGCCAGGATGAAGAGGACCTCCCCTACAGGCAGAATGACTTGGTGATGGTGAGGGATATTGGGCAGGACACCATGTGGGAAGGCATCTTATTGGCGACGGGACAGCATGGCTTAGTTCCTGTCCACGCCATGCAGCCTCTTCCGTATCCCTTTTACCAGTGGTTCCTCAGGAAGTATCCAGGAAATGCAGGAGGCCCCCCAGGGACACTGCACCTGTTTGACCACCCTATTGGTACGGGTACATGTGTAGCCGAGGTGGACAACAGTCCCACAGGAGCGGACGAGCTGACCTTCCGCAGGGGAGACCTGATTGAGATCGTGGGCTTCCTGGTGTCAGGCCTGGACTGGTTCATCGGCAGACTCTTCTCTAGCGGCAGGGTTGGGTTTGTCCAGAAAACGCATGCAAAGCCGGAGAGTTTCAAACCTCTGGACAGACAATTGGTCTTTCTGAGTGAAGAGGAGAGAGCGTCTCTGTCTCAGTTTAACCCCTGCAGCGACCAGTGCTATGCTGCCCTCCTTGGCAAACTCTTACAAAGTGACATCAGCACTGTCTACAGGCTAGAGTGCAGGAGCAGGGGCAACCCCCGAGAGAGCCTGGTGTCTACGAAGAGCGAGTCTGCTCCGTGCCACTCCACGCCCCGGCAGTCCATGTGCACCTCACCGAGCCTCtcggagaaggagagggagaatgaGGCCTTGTCCTTCAGCTTTGAGGACACGTTCAGAGAGATGGATGAGTTCGAGGAGGACCCCAGGGTGTTCCTAGAAGAGAACAGCTGGGAAGGGGAGGAGGCGGAGGCACTGGATCCCATGATGACCCTCCTGAATCAGGATTGCTTTTCCGAGCACCTCCAGGGCCTGTATGACCTCCCGTTTTCCTTTCTGAAAACCTCCTTCAGTGGGACCTCCGAGGACGAGCTGCTGCAGCACCTGGAGGCCATGAGAGAGGGGGCAAAGCGGGGCAGGATGCACTGGGCCCACCGGAGAGTGTGCTTCCTCCTGGGCCGGGTGTGTGCCAGGAAGCAGAAGTTCTCCCAGGCACGGGTGTACTTCGAGGAGGCACTGGCGGTAGCGGTGCCAGGTTTTGCTGACCCCCCCCTGCTGGTGGCTCTGTATGCCAGCCTCACCGCCGTGTACCTGAAGCAAAGGATGACCTCCAAGCTGAGCCTGACTCTGGAAAAAGCCAACGCCCTGCTGCTCTGCCTGCCCCAACACAGCTTCTGCTCTGTGGACGAGTGCGAGGTCCTCAAGCTCGTCCTGCGCAAGGCCATTGTGACCAATGACAGGCACCTGGAGGCGCGGGCCTGCTACCTAATGATGGACCTCTTCCTGACCCTGGGCAAGATGGAGGAGGCCCTGCCCTTTGTGGAGAGGCTCCAATTCCTCACCATCAGCCTTTCTGCCGAGGCCGGGCTGGAGCTCCTCGCCCCTGTGGACTTGAACTGGATGCTGAGCAGGCTCTACCATAAGAAGTACCTGCCCTACCTCTCCCTGGCCTCGATGAGCCTCGACTCGCACCCGAGTCGCTCCCTACAGGACGCCTTCCAGAAGATTGACCTCTTCGTCAAGAACTCTGGCAGGCTCAGCGGCCAGTGGAGAGAGGGCGACCCGGCGCTCCATACACTCCCTGCACAGCTCGTGGTCTACCTCCAGCAGGCCCTGACCATCGCCAGCCAGGGGGACGACCTGAAGATCCAGAGGGACCTGTGCCTGAGCCTGGCCAGCCTGTACCAGCAGCATGGCGCCCTGGACCAGGCGGTGGACTGCGCGAAGAGGGCCGTAGTGGCGGGCAGCCGTGTCAATGAGGAGGAGGCCTTCCAGGCGTCCGTGCTGTTGgcctggctgctgctgctgacagaGGAGCCAGGGAGGGCCACCGCCATGCTGCAGCCCCTCCTGCTTTCACTGCACGAGACCGACAGCCCCACCCAGCGTGGCGTAGTGCACAACCTACTGGCCATGTGCCTCAGGAAGGCAGGGCAGCCCCAGGAGGCGGGCAGGCACTTCTTGGGTGCTCTCCGGATTGCCCAGGAGAGCGGCAACCGGCGCAACCAGGCCCTGGCACTGGCCAACTTTGGCTGCCTGGCACTCTCCGTCGGGGCTCCCGTCCTGGCTGAGCGGTTCCTGTCCCGCTCGCTGGTCTTGTTCTCCGAGCTGCTGGAGAGCCCCACAGATGCAGAGCACGTGCAGGTCTACCTGTGGCTGGGCAGGAGCTacggggacagggacagggtaCAGGACGTCAGGCTGTGCTATGAGTTGGGACTGCTGATCGCCATCACTGCCAAGAACCTGCACAGTCAACTAGTGGTTGCTAAAGCACTCAGTAGCTTTTACACAAAGATGCAGCTCCATGGCCAGTGTATCATCTACTGCGAGCACTGTGTCTCGCTGTCTCGGGACATGAGGGACAAGAGACTGGAGGGCGAGTTTCTGGAGACCCTGAGTGAGCTCTACCTGTCCCTGAACACGGACAAATCTTCAAGAAAATCGCTGGACTACACCAAGCAGAGCCTGAGGATATCAATCGACCTGgggaagagaagggaggagtcTGAGACCTGGCTTCAAGTGGGCAGGATCTACTACGTCATGCAGGAGGATGAGCTGGCAGAGATGTATTTCCAGGATGGAGCTCTGCCTTTTGCCAGACGTTTTGGAGACGCACATTCTGAATTCCGGCTTCTGAGTAAACTCACCGAGCTGCTAATGAACTCGCAGCAGAGCGGAGAAGCCCTGCAATACGCCAGCCTGGCCGTCCGAATCAGCACCACAACTGGAGACCGTCTGAAAGAGAGAGTGGCTTTTCACCGGCTGGCCACGGTGTACTTCTCTCTCCAGCAGTTCGAGATGGCTGAGAACTACTACCTGAAGGCGCTGTCTCTGAGCCCCCCGGTGCTGCAGTCGGCCAGTGAGGCCAGATACTTTGTGAAAACATACTGCAGGCTGGGAGACCTAACTCTGCACAGGTTAAAAGACGCCGTCGACGCCATGGGCTACTTCCAGCTGGCCCTGGCCGCGGCACTGGAGGACAGAGGGGACACCCGAGCCCTGTACATCGTGTACATGAAGCTGGCAGAGATACACGGTAGACACCTGCCCGACAAGGAGCTCTGTCAGGGCTACATCAGCCAGGCGCAGGCTCTCAGGAAGGAACTGTCTGGAGACGCGTCCTCTGAGACGTAGCCAGAGGGATGCTGGACAGGAAGGAGAGCGAATCCGGCCGTGATGCCGAGCGCGGGATCACTCTCGCAGAGCAGTGCCCCACTCTACCTCTGCAGGTCCTGGCCCACTGGGGCTTTGCCAGAGGGGATTCTGGGAGTCAGTGCTGCTGGCaaccaaacgagcaagatgaGCCAAGTTCTGTAACCTTTTTCTTGTGTCCTCATGTGTTCCTGTAAACCacattatttatgttgttttccaCAAGCAAAACCGGTcctctttttggttttgttttgatatgtacagtatagactttttttttttttataaaacaaggAAGAAATCTCTAATTCTTTCTCGGCAATGTGGCCTTGGCCCGGCTCTGATTGTCAAGaaagttgttgtttctttttttgtcaatTAAAGAACAAAGGAATCAGTTGGTTAGTAAATGAAAATGAGAGAAATGAGAGAGAAGTTCTGTGCCTGTTTATAAGAGCTCAGTGCTGGGTCTTAGTTCTTTGTAAATGGACTATTTTTAACTAAGCAGGAAATGCAAACAACAAATGCCCGAAGCttaatttgattgtgttttgtaaatatgtaaaataagcTGCAGTACACTGgaaatcatcattattattattattatattttgtactgaATGAAGGAACCTGTCTGAACAGATTCTTATGAATGTGAGTAATAACTCCATAGTATATTCTAACAATAAACTGACATATTTTTGTACAGGA

Function

GO: NA

KEGG:

id description
K24313 SH3TC; SH3 domain and tetratricopeptide repeat-containing protein

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00011181 True 4865 mRNA 0.55 17 13156251 13169149

Neighbor

gene id symbol gene type direction distance location
AMCG00011177 NA coding upstream 151824 12999534 ~ 13004427 (+)
AMCG00011172 NA coding upstream 194466 12960213 ~ 12961785 (+)
AMCG00011171 NA coding upstream 228289 12918054 ~ 12927962 (+)
AMCG00011176 NA coding upstream 241180 12901039 ~ 12915071 (+)
AMCG00011168 NA coding upstream 393935 12759630 ~ 12762316 (+)
AMCG00011184 NA coding downstream 21630 13190779 ~ 13215914 (+)
AMCG00011187 ubtd2,LOC107672801,LOC107718046,LOC108279301 coding downstream 116148 13285297 ~ 13314709 (+)
AMCG00011186 NA coding downstream 159233 13328382 ~ 13330598 (+)
AMCG00011185 LOC107723822,LOC107664350 coding downstream 179415 13348564 ~ 13367027 (+)
AMCG00011189 ebf1 coding downstream 207442 13376591 ~ 13379795 (+)
G104835 NA non-coding upstream 137187 13018792 ~ 13019064 (+)
G104814 NA non-coding upstream 216081 12935436 ~ 12940170 (+)
G104800 NA non-coding upstream 324971 12830849 ~ 12831280 (+)
G104709 NA non-coding upstream 604387 12551040 ~ 12551864 (+)
G104666 NA non-coding upstream 721695 12429496 ~ 12434556 (+)
G104883 NA non-coding downstream 17799 13186948 ~ 13229416 (+)
G104910 NA non-coding downstream 384252 13553401 ~ 13555056 (+)
G104923 NA non-coding downstream 496798 13665947 ~ 13679380 (+)
G104979 NA non-coding downstream 688682 13857831 ~ 13858192 (+)
G104980 NA non-coding downstream 689502 13858651 ~ 13858982 (+)
G104815 slc23a1,pwwp2a,LOC106603911,LOC102781148 other upstream 213169 12942380 ~ 12943082 (+)
AMCG00011163 reep2,LOC107557670,LOC107588406 other upstream 476822 12670376 ~ 12679429 (+)
G104719 NA other upstream 537196 12610129 ~ 12619055 (+)
G104694 NA other upstream 629220 12525360 ~ 12527031 (+)
AMCG00011141 LOC567622,LOC108413244,LOC103367052,LOC101466533,LOC107379323 other upstream 1015786 12067451 ~ 12140465 (+)
AMCG00011204 NA other downstream 699188 13868337 ~ 13878282 (+)
AMCG00011210 bod1,LOC107581912,LOC107661728,LOC107713186,LOC107662284,LOC107587245,LOC108278584,LOC106603873 other downstream 816516 13985665 ~ 13992845 (+)
AMCG00011209 cpeb4,LOC106603870 other downstream 843972 14013121 ~ 14061027 (+)
G105139 LOC100846954 other downstream 1450541 14619690 ~ 14620534 (+)
AMCG00011241 LOC102221627,LOC107740141,LOC107680337,LOC107593202 other downstream 2151631 15320780 ~ 15322658 (+)

Expression


Co-expression Network