AMCG00011182


Basic Information

Item Value
gene id AMCG00011182
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 13056733 ~ 13104555 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00011182
ATGTGTCAGCGAACTGTAGGAGAATACACGGAGGGGCAGAGCAAgattaGTTCACTGGCAGCGATGCAAATTAATACATCTTGCGTTCTAGtgtgcgGCTGTGACTTGGCCCGATCGGGCTTCTTCCAGAAGAATGGGGAGTACATCTGCACTTCGGACTACCAGCGCCTGTATGGCACCAAGTGTGACAGCTGTGGGGATTTCATCACCGGGGAGGTGGTCTCCGCCCTGGGCCGCACCTACCACCCCAAGTGCTTTGTCTGCAGCGTGTGCAGGAAGCCGTTCCCCATCGGTGACAGAGTGACGTTCAGCGGGAAGGACTGCGTCTGTCAGCAGTGTTCCCACACCCTGGTCAACACCAATGAGCCCATAAAGATCCATGGGCCCAGTCCCCTGGAGAAGCAGTGGCATGTCAGCTGTTTTAAGTGCCAGACCTGTGGGATCGTGTTGACAGGGGAGTACATCAGCAAGCCGGAGGGAAACACTACCACCCGACCTGTGCGCGCTGTGCCCGGCTCGGAGGTGTGGCACCCCCTGTGTAAGCAAGCTGCCCGGGCGGAGAGGAAGCTGAAGGCCAAAGTGGACAATGAGATCCTAAATTACAAAGATTTCGCTGCCCTCCCTAAGGTTAAAGCTATATATGATGTTCAGCGGCCTGATCTCATGTCCTACGAGCCCTGTCACAGATACTCCTCTGATGACAGGCTTGAGAGGTTCAGCTATGGGGAGGACATCTACGACAGCATCGACCTGCGCCACAGGCGGGCCTCCAGTCCGGGATACATCGACTCTCCCAGCTACAGTCGTCAGGGCATGTCTCCGACTGTGCCTCGCTCCCCGCAGCACTACTATCGCTCTGGCACGGAAAGTGGCAGAAGTTCTCCTTATTACAGTCAGCTCGATGTCAGAGCCGCCACGCCCACTGCGTACCAGGCTCCCAAGCATTTCCATGTTCCAGCCACAGGAGAATCAAACATCTACAGGAAACCGCCCATCTATAAGAGACATGACAATCATCGCTACACAGCCACCAAGAGCAAGACGAGTGAGGACATAGTTCACTCTACCAGCACACTGAGACCGATTACTACCAGTACCATGGCTCGCCTAAAGATCCAGGGTGGAATCGGACGCATGATCCTGAAGGAGGAGATGAAGGCGCGCTCCGGTTCCTATGACAACGACCCCTGGGCCAGCGCGCGGCACTCTCGCAGCGGCAGCAAAGAGACTCTGCACAGCATGGGCTACGAAGCCTCCATGAACGGCTctcctCGGTCACACTACACTGTGGACAGCGACTCCTTCATTTCCAAGTCTGCCTCCCTGCCAGGCTACGGGAGAAACGGCCTGCACAGGCCGCAGAGTGCAGACTACTTCCAGTACGACAGCAGCAATGCAATCTATCCCTATGAAACTCTAATAGTGACCACCAGGGGGCGGAATCGGCTGCCAAAAGACGTAGACAGAGCCAGGTTGGAGCGCCATTTATCCCCTGAGGAGTTCTACCAGGTTTTTGGGATGAGCATCGCCGAGTTTGACCGGTTAGCTCTCTGGAAGAGGAACGAGCTGAAGAAGCAGGCCAGGCTCTTCTgatcggagagagagagagagaaagagagggagaggaagaaagagagcgagagtgaCCATGTACTCCAGCCAAAGGGAGCAGACATGCTGCATCTGCGAGAGACCTTGAGCAGAGCTTGCGCTGGGGGCGGGGGGACAACTAAATGCTCCCTTTGCAATTGtattcagctttttattttgataatgttttactctgtatgtatttatttttcttttgttccacAAGATGACTGTGGCGTGTCTAATTACATTACCAGTTGTGTTAAGAAGTCATTAGACACAGGTGGGGCTTTGCCTTATTAAGCTGTACAGATTACAGCGTGACTCGAATGTTGGTATCATATCTGCCACTCCATGAGACTGTCGCGGTGTGGAAGAGCGGCGTCAGTTTCTTATATTGATTTACAcgtggaaaaatatattttacaccaTGTAATCCACTTGGGCATATCGTAAACGCATACCTTCAGCTTCATTTTGCATTCATCACATTAGTTTTAGCTTGTACTACTAAGGAGATGGGCATTAGATAGGTGTTGACGTGAGACGCTCCACTATGTGTTTCATATCCACACAGCGGCAGCAGGTGGAGTTTGTTTGGTGTGGAAGATGCTTTCATGAAGTGATGATGTAAACCAAAACAGGATGTAAAGAAATTAATGACGTATCAAAAAGCTATGGAGGCAGATGCTGCCGATCCCTCTCCCCTCCCATCCGCATTACCATGTTTAGGTTAAGCACTGAATGTTATTTCCCGGGGAAAAGGAATTCCCTCGAAAATCTATAGATGTTTTCAGGAATGTATTAAGAGTTGTTTTGATctatacataataatactactaataataatattaataataataataat

Function

GO:

id name namespace
GO:0005488 binding molecular_function

KEGG:

id description
K07520 ABLIM; actin-binding LIM protein

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00011182 True 2458 mRNA 0.51 19 13056733 13104555

Neighbor

gene id symbol gene type direction distance location
AMCG00011179 NA coding downstream 22614 13019906 ~ 13034119 (-)
AMCG00011180 NA coding downstream 43382 13004538 ~ 13013351 (-)
AMCG00011178 slu7,LOC107741361,LOC107550887,LOC107756482,LOC107680665,LOC107676532,LOC107601502 coding downstream 57445 12988649 ~ 12999288 (-)
AMCG00011175 NA coding downstream 70152 12985385 ~ 12986581 (-)
AMCG00011173 NA coding downstream 72537 12966537 ~ 12984196 (-)
AMCG00011183 NA coding upstream 82393 13186948 ~ 13192140 (-)
AMCG00011188 ublcp1,LOC106567438,LOC106603889,LOC107672805 coding upstream 223938 13328493 ~ 13343464 (-)
AMCG00011194 NA coding upstream 580079 13684634 ~ 13687704 (-)
AMCG00011200 NA coding upstream 639363 13743918 ~ 13745225 (-)
AMCG00011198 LOC105011263,LOC107750325,LOC107677389,LOC107587064 coding upstream 647998 13752553 ~ 13778757 (-)
G104846 NA non-coding downstream 116573 12935482 ~ 12940160 (-)
G104845 NA non-coding downstream 125650 12928672 ~ 12931083 (-)
G104776 NA non-coding downstream 293066 12761045 ~ 12763667 (-)
G104697 NA non-coding downstream 532375 12523837 ~ 12524358 (-)
G104680 NA non-coding downstream 563632 12429965 ~ 12493101 (-)
G104915 NA non-coding upstream 271578 13376133 ~ 13376997 (-)
G104916 NA non-coding upstream 273502 13378057 ~ 13378299 (-)
G104921 NA non-coding upstream 448885 13553440 ~ 13555074 (-)
G104928 clint1a,LOC108441628 non-coding upstream 557631 13662186 ~ 13667716 (-)
G104998 rpl26l1,rl26,LOC105024418,LOC107381811,LOC100708525,LOC103144500 non-coding upstream 759966 13864521 ~ 13867615 (-)
AMCG00011174 slc23a1,pwwp2a,LOC106603911,LOC102781148 other downstream 100466 12942390 ~ 12956267 (-)
AMCG00011169 NA other downstream 229853 12821025 ~ 12826880 (-)
G104749 NA other downstream 416506 12634856 ~ 12640227 (-)
G104715 NA other downstream 507740 12548289 ~ 12548993 (-)
AMCG00011152 kcnip1 other downstream 599406 12427993 ~ 12457327 (-)
G104909 NA other upstream 260528 13365083 ~ 13367074 (-)
G104929 NA other upstream 561240 13665795 ~ 13679262 (-)
AMCG00011211 NA other upstream 889428 13993983 ~ 13996589 (-)
G105050 NA other upstream 962660 14067215 ~ 14068561 (-)
G105290 LOC108429417 other upstream 2265847 15370402 ~ 15373179 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000000_12636358_12646989 NA coding CI01000000 null 12636307 ~ 12647372 (-)