AMCG00011185 (LOC107723822,LOC107664350)


Basic Information

Item Value
gene id AMCG00011185
gene name LOC107723822,LOC107664350
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 13348564 ~ 13367027 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00011185
CGCATGCGCAGTGGCGCGCAGTGTTTTTGTAATGGCTGCTGGTTGACATGACTCAGAGCCGTCTCCTCGCCGGAATTAACGAGCAAAGCCACACCGTTACCTTGGGTTTACCTGAGTTACAATGGTTGATTTCCGACCGGAGAAGCTTCGCGAAACAGAAACACACGGAGTGAAAACAAGCATCGTGAGCAGCAGGACAATGGCTGTCAAGGAGAAGCTGGAGGCAGTGTTGAATGTGGGTCTGCGGGTGCCCAGTATCATGCTGCTAGATGCGCTTTACCGTTGGGACGTCAGCTCCTTCTTCCAGAAGATCCAGAGGAGCAGCCTCAACAACAACCCCCTCTTCCAGTACAAGTACCTGGCTCTGTACCTGCACTATGTGGGTTACATCCTCAGCGTGGTTCTCCTGACCCTTCCTCGACAGCATCTGGTCCAGCTCTACCTGTATGTCCTCACGGCTCTGCTCCTCTTTGCTGGACACCAGATCTCCagGGATTATGTGAGGAGTGAGCTGGAGTCCGGCTATGAAGGACCTCTATACCTGGAGCCACTGTCAATGAACCGCTTTACCACAGCTCTCGTAGGACAGCTGGTGGTGTGCACCCTGTGCTCCTGTGTCATGCAAACCAAGCAGATCTGGCTGTTCTCCGCTCACCTGCTCCCCCTGGTGGCCAGACTGTGCCTGGTGCCACTGGAGACCATTGTCTTCATCAACCGCTTCGCCATGATATTTACTGGCCTGGAGGTCCTCTACTTCCTGGCCTCCAATTTACTGGTGCCCTACAAGCTGGCCAAGACTGCCTATCGTGAGCTCGTGCAGGTGGTGGAGGTGTATGGTCTCTTGGCCCTGGGCATGTCTCTGTGGAATCAGCTGGTGGTGCCCGTGCTGTTCATGTCTTTCTGGCTGGTCCTGTTCGCCCTGCAGATCTACTCCTACTTCAGCACGCGAGACCAGCCCACCTCGAGGGAGAGActgctcttcctcttcctcaccaGCATCGCAGAGTGCTGCAGTACGCCCTACTCCCTGCTGGGGCTGGTCTTCACCGTGTCCTTTGTGGCGCTGGGCGTCCTCACGCTCTGCAAGTTCTACCTGCAGGGATATCGCGCCTTCATGAATGACAACACCATGCACAGgGGGATGACGGAGGGGATCACGATGCTGATCCTGGCGGTGCAGACAGGGCTGATCGAGCTGCAGGTCATTCACCGAGCCTTCCTCCTCAGCATCATCCTGTTCATCGTGGTAGCCTCCATCCTGCAGTCTATGTTGGAGATCGCTGACCCCATTGTCCTGGCACTGGGGGCATCTCGAGACAAGAGCCTCTGGAAGCACTTCCGCGCTGTGAGTCTGTGCCTGTTCCTGCTGGTCCTGGGAACGCTGTTAATCTACGTGCTGTTCATGGTGGAAGAGTTCCGCAAGGAGCCGGTGGAGAACATGGATGATGTCATCTACTATGTGAACGGCACCTACCGGCTGCTGGAGTTCCTGGTGGCACTGTGCGTGGTGGCCTACGGCGTGTCCGAGACGATCTTCGGCGAGTGGACGGTGATGGGCTCCACCATCATCTTCATCCACTCCTACTACAACGTATGGCTGCGTGCCCAGTTGGGCTGGCAGAGCTTCCTGCTGCGCCGGGACGCCGTCACCAAGATCAAGTCTCTGCCCACTGCCACCGTGCAGCAGCTGGAGAAACACAATGACATCTGTGCCATCTGCTACCAGGACATGAAGTCAGCTGTGATCACTCCCTGCAGTCACCTCTTCCATGCTGGCTGCCTCAAGAAGTGGCTCTATGTGCAAGAGACCTGCCCCCTCTGTCACAGCCAGCTCAAGGGCCAATCACAGACCTCCGTGACCAATGTGCCCCCCCAGGAGCTGGCACCGGCAGCACAGGAACCTGCCAATCACAATCAAGGGGAGGATGGGCCAGTACAGCCTGCCCCAGAGGACCATGCAGCCCAAGGAGAGAGGGACTCTGTGAGAGAGGGCAGCACTGGGCCTTCCCCCACACCCACAGGAGACACCAAGCATCCTGAGGGACAAGCCGCAGGCTGCCAGCCTCCCTCTGTGCACTTGGACCCCGGATCGGACAGTTCTGAGGAGGTGGGCAGCCAGTGTGGCGCTGTGGGCGGCCAGTGTGGCGCTGTGGGCGGCCAGTGTGGCGCTGTGGGCGAGGGCTGGGGAGGGCTGGATCCTTCTCGGACAGCCCACCGAGGAGTCCCCCAGAATTGTCGACCGCCCATGCCCAGCCCTCACCCTGCCGGACATGAGCTGGGCAGTGGGCCTCCGGGGTCCCCCCAGGGGGCAGCTCAGGGGCTGGCCACTCCCTCGGCACAGGGACTCTGAGGGAGCGTCCGCTGTAGACTGGGGGCCGACACCCCCTCTGTCACAACGCAGGCAGCGGCCATTAAGAGTGGGGAGTTTTGCAGGATGGAAGTTACTGAATAACACCTTTCCTTCTCCCCAGACCCTTCCAGCTCTCACAGGATCCCTCCCAGGGAGTTAAGCCTACATTATGACTGTTAAAGGAAGGGCCAGTTACTGGGTAAAATAACATGATGATAATTGACTAAATATGAGGAATACTCCATATCAGACAGAAAGAGACTGAACATTTGGTGAACTAGAAGCTTTAAGCACGCTTAGGCTAGCACGCTCTCACTGTCttgtattagattttttttttttttaatctatatatgtatacacacacacacacatacctgtgtgtatgtatgtatatatatatatatatatgtgtgtgtgtgtgtatgtatgtatgtatatatatatataatatacacacacacacatcgtgtatgcatatatatgtatgtgtgaatgtatacacacacatatatagtgtatatgtatatacatgtataatgcCACTGCATTTGCACTAATGTAATTTATAGCAATGCTCCAAAGTTGTCTTGTCAGGTaccaaatatttttctttggtgtgtgtgaggaaaacaaaacaaacatacatacacacatatatatatatataatagaaataaGGGGGGTTTGATATATGATAGTGTTAATGCAGCGCCAGGTAAAGGGAAGTGGGCTGAAGCTTATATGAACACTTTGGTGCCCTCTATGGGTAGAAGTGGGAAGAGCTTATGACCATGGATTAAACTGGTGCAAGCAAGAGAACTTATTTCAGTATAGAATTGACTTGGACAGTATTATTTTGGCATTAATTGCATTTGTgagaatgaatacataaaacaatgtatgaACAAACTTGGCAaatgccatttttattattactttgtaGTAATTGGATACATCTTGCTCACAGTTCCTTGAATGGAAGAGCAGTGGCTGATGGTGTGTGTAGCTTTTACATCCATCATGGCTTCTGTAGacctttttccttttgtatcTTATCATTTGAATTGTAGTCTTGAATgaagggatttgtttttctgctggaGAGACAAAGATGCCCTAATCCAGATtacattctatttttattatggtgaattttttttccattttttttttttatattaaatttacATGATGTTAATCTGTGAATGCTGAATTCAGATCAAATCTCAGTCGTGATCAGCGAATGAATTTGTCTGAAatctggtttttattttacaaaactgaaTGTCTAAATAAATTGAAGCATCAAATTTAAACAAG

Function

NR:

description
PREDICTED: RING finger protein 145-like isoform X2

GO:

id name namespace
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K23789 RNF145; E3 ubiquitin-protein ligase RNF145

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00011185 True 3673 mRNA 0.51 11 13348564 13367027

Neighbor

gene id symbol gene type direction distance location
AMCG00011186 NA coding upstream 17966 13328382 ~ 13330598 (+)
AMCG00011187 ubtd2,LOC107672801,LOC107718046,LOC108279301 coding upstream 33855 13285297 ~ 13314709 (+)
AMCG00011184 NA coding upstream 132650 13190779 ~ 13215914 (+)
AMCG00011181 NA coding upstream 179415 13156251 ~ 13169149 (+)
AMCG00011177 NA coding upstream 344137 12999534 ~ 13004427 (+)
AMCG00011189 ebf1 coding downstream 9564 13376591 ~ 13379795 (+)
AMCG00011192 NA coding downstream 120919 13487946 ~ 13492456 (+)
AMCG00011191 LOC107595778,LOC103481132,LOC106906007,LOC107749771,LOC106521921,LOC100695038,LOC106611650,LOC105028844 coding downstream 135608 13502635 ~ 13505520 (+)
AMCG00011190 ebf1,LOC107669108,LOC107723797 coding downstream 171221 13538248 ~ 13544283 (+)
AMCG00011193 NA coding downstream 293897 13660924 ~ 13677591 (+)
G104883 NA non-coding upstream 119148 13186948 ~ 13229416 (+)
G104835 NA non-coding upstream 329500 13018792 ~ 13019064 (+)
G104814 NA non-coding upstream 408394 12935436 ~ 12940170 (+)
G104800 NA non-coding upstream 517284 12830849 ~ 12831280 (+)
G104709 NA non-coding upstream 796700 12551040 ~ 12551864 (+)
G104910 NA non-coding downstream 186374 13553401 ~ 13555056 (+)
G104923 NA non-coding downstream 298920 13665947 ~ 13679380 (+)
G104979 NA non-coding downstream 490804 13857831 ~ 13858192 (+)
G104980 NA non-coding downstream 491624 13858651 ~ 13858982 (+)
G105046 NA non-coding downstream 695673 14062700 ~ 14063157 (+)
G104815 slc23a1,pwwp2a,LOC106603911,LOC102781148 other upstream 405482 12942380 ~ 12943082 (+)
AMCG00011163 reep2,LOC107557670,LOC107588406 other upstream 669135 12670376 ~ 12679429 (+)
G104719 NA other upstream 729509 12610129 ~ 12619055 (+)
G104694 NA other upstream 821533 12525360 ~ 12527031 (+)
AMCG00011141 LOC567622,LOC108413244,LOC103367052,LOC101466533,LOC107379323 other upstream 1208099 12067451 ~ 12140465 (+)
AMCG00011204 NA other downstream 501310 13868337 ~ 13878282 (+)
AMCG00011210 bod1,LOC107581912,LOC107661728,LOC107713186,LOC107662284,LOC107587245,LOC108278584,LOC106603873 other downstream 618638 13985665 ~ 13992845 (+)
AMCG00011209 cpeb4,LOC106603870 other downstream 646094 14013121 ~ 14061027 (+)
G105139 LOC100846954 other downstream 1252663 14619690 ~ 14620534 (+)
AMCG00011241 LOC102221627,LOC107740141,LOC107680337,LOC107593202 other downstream 1953753 15320780 ~ 15322658 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_007420 rnf145a coding NC_007125.7 CM002898.2 34966598 ~ 35012162 (+)
grasscarp (Ctenopharyngodon idella) CI01000000_12831074_12852405 RNF145A, RNF145, RNF145B, RNF145.L coding CI01000000 null 12830672 ~ 12852537 (+)