AMCG00011187 (ubtd2,LOC107672801,LOC107718046,LOC108279301)


Basic Information

Item Value
gene id AMCG00011187
gene name ubtd2,LOC107672801,LOC107718046,LOC108279301
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 13285297 ~ 13314709 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00011187
ATGCTCCTCTACAGCTACAGGgaagagaagaaggaggaggggggagCTGATGCCGACTGGGTGTCCATTGCTAGTCAGAAGGGAAGAGTTCAGAAGAGggggaagaaggagagagggtcTGCGGGGCAGCGCAGTTTGCAGACCCATGGGCGGGTGTGTGGGCACTCAGCACGACTCCTTGGGCAGCTTGAACGAGAATTCAGACGGAACTGGAGGTATCCAATATCTCCAAAGCCCTGTGCAGCAGGCCGATTCTGTAACCGTACCACGCCGTGTCCGGTTACACTGCCGCATTTTGCTTTGGGTCGCAATCAGCCCCTGAAGAAGGAGAAACCCAAGTGGAAGAGTGATTATCCGATGACCGACGGTCAGCTGCGCAGCAAACGGGATGAGTTCTGGGACACGGCGCCCGCCTTCGAGGGCAGGAAGGAGATCTGGGATGCCCTTAAGGCGGCCACCCATGCATTCGAGAGCAACGACCACGAACTGGCGCAGGCTATCATCGATGGCGCGAGTATAACGCTGCCACACGGTGCCCTGACCGAGTGTTACGATGAGTTGGGCAACAGGTACCAGCTGCCAGTCTACTGCTTGGCGCCGCCAATCAATATGATCGAGGAGAAGAGCGACCTGGAGATCCTGGACGTGCCCGACCCACCGCCCAACTCTGGGCACGAGTGCCTGCTCCGGCTGCGCCTGTCCACGGGGAAGGACCTGCGGCTGGCGGTGCGAAGCACGGACTCAGTGCACCACATGAAGCGGCGGCTGCACACGGAGGAGAGCGTGGCCCCGGCCAGTCAGCGCTGGTTCTTCTCGGGCCGGCCGCTCACGGATAAAATGAAACTTGAAGAACTTAAGATCCCCAAGGACTACGTGGTGCAGGTGATCGTCAGCCAGCCTTTGCAAAACCCCACACCTGTGGAAAACTAA

Function

symbol description
ubtd2 Predicted to be located in cytoplasm. Orthologous to human UBTD2 (ubiquitin domain containing 2).

NR:

description
PREDICTED: ubiquitin domain-containing protein 2

GO:

id name namespace
GO:0005737 cytoplasm cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00011187 True 930 mRNA 0.59 5 13285297 13314709

Neighbor

gene id symbol gene type direction distance location
AMCG00011184 NA coding upstream 69383 13190779 ~ 13215914 (+)
AMCG00011181 NA coding upstream 116148 13156251 ~ 13169149 (+)
AMCG00011177 NA coding upstream 280870 12999534 ~ 13004427 (+)
AMCG00011172 NA coding upstream 323512 12960213 ~ 12961785 (+)
AMCG00011171 NA coding upstream 357335 12918054 ~ 12927962 (+)
AMCG00011186 NA coding downstream 13673 13328382 ~ 13330598 (+)
AMCG00011185 LOC107723822,LOC107664350 coding downstream 33855 13348564 ~ 13367027 (+)
AMCG00011189 ebf1 coding downstream 61882 13376591 ~ 13379795 (+)
AMCG00011192 NA coding downstream 173237 13487946 ~ 13492456 (+)
AMCG00011191 LOC107595778,LOC103481132,LOC106906007,LOC107749771,LOC106521921,LOC100695038,LOC106611650,LOC105028844 coding downstream 187926 13502635 ~ 13505520 (+)
G104883 NA non-coding upstream 55881 13186948 ~ 13229416 (+)
G104835 NA non-coding upstream 266233 13018792 ~ 13019064 (+)
G104814 NA non-coding upstream 345127 12935436 ~ 12940170 (+)
G104800 NA non-coding upstream 454017 12830849 ~ 12831280 (+)
G104709 NA non-coding upstream 733433 12551040 ~ 12551864 (+)
G104910 NA non-coding downstream 238692 13553401 ~ 13555056 (+)
G104923 NA non-coding downstream 351238 13665947 ~ 13679380 (+)
G104979 NA non-coding downstream 543122 13857831 ~ 13858192 (+)
G104980 NA non-coding downstream 543942 13858651 ~ 13858982 (+)
G105046 NA non-coding downstream 747991 14062700 ~ 14063157 (+)
G104815 slc23a1,pwwp2a,LOC106603911,LOC102781148 other upstream 342215 12942380 ~ 12943082 (+)
AMCG00011163 reep2,LOC107557670,LOC107588406 other upstream 605868 12670376 ~ 12679429 (+)
G104719 NA other upstream 666242 12610129 ~ 12619055 (+)
G104694 NA other upstream 758266 12525360 ~ 12527031 (+)
AMCG00011141 LOC567622,LOC108413244,LOC103367052,LOC101466533,LOC107379323 other upstream 1144832 12067451 ~ 12140465 (+)
AMCG00011204 NA other downstream 553628 13868337 ~ 13878282 (+)
AMCG00011210 bod1,LOC107581912,LOC107661728,LOC107713186,LOC107662284,LOC107587245,LOC108278584,LOC106603873 other downstream 670956 13985665 ~ 13992845 (+)
AMCG00011209 cpeb4,LOC106603870 other downstream 698412 14013121 ~ 14061027 (+)
G105139 LOC100846954 other downstream 1304981 14619690 ~ 14620534 (+)
AMCG00011241 LOC102221627,LOC107740141,LOC107680337,LOC107593202 other downstream 2006071 15320780 ~ 15322658 (+)

Expression


Co-expression Network