AMCG00011188 (ublcp1,LOC106567438,LOC106603889,LOC107672805)


Basic Information

Item Value
gene id AMCG00011188
gene name ublcp1,LOC106567438,LOC106603889,LOC107672805
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 13328493 ~ 13343464 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00011188
GATGTCTGTGTCAGTCATAATAAAGTGGGGTGGGCAGGAGTACTCCATCACCACCCTGTCTGAAGAGGACACCGTGCTCGACCTCAAACAGTCCATCAAATCTCTCACCGGGGTCCTGCCGGAGAGACAGAAGCTGTTAGGGCTGAAAGTAAAAGGAAAACCAGCTGAAGATGACATCAAACTGGGCACGCTGAAGCTGAAGCCCAACACCAAGATCATGATGATGGGCAGCCGAGAGGAGAGCCTGGAAGATGTGCTGGCTCCACCCCCTGAAAACGATGACGTCATAAACGATTTTGACATCGAGGAGGAGGTGATTGAAGTGGAGAACAGGGAAGAAAACTTGGTGAAAATAGCCCGTCGAGTCAAAGACTACAAAGTAGAGATTTTAAATCCCCCCAGGGAAGGGAAGAGGCTGCTGGTGCTGGATGTGGATTACACCCTCTTTGACCACAAGTCCTGCGCAGAGACCGGGCAGGAGCTGATGAGGCCCTACCTCCACGAGTTTCTGACCACAGCATACGAAGATTACGACATTGTGATCTGGTGTAATGCGGCGATGATCACAGTACACACTCCCAAGAGAGGAGTAGTGGAGGTGAAGCCTCTGGGGGTAATCTGGGGGAAGTACAGTGAGGTCTACACCAAGAAGAACACCATTATGTTCGATGACATTGGCAGGAACTTCCTCATGAATCCCCAGAATGGGCTGAAGATCAGACCATTCATGAAAGCACATTTAAACAGAGAGAAGGACAAAGAGCTCTTCAAACTCTCGCAGTACCTCAAAGAGATTGCAAAGCTGGAGGACTTTTCGGATCTCAACCACAAGCACTGGGAGAGACCGAAGCAGCTGTTCCATGACGTGACCAGTGAACCTGCTTCACCGCTCAAGTGTCACATGGCAACACAGCAGCGCACCCCTCCGACCATagGAGCCCGTCATACCCTGGAAttagagtgtgtgtttgtgacacAGCACCAGCGTGTGGTTGAGGACGGCACCCAAGCTGTGCTGGTGGCAGGTGAAATTGCCACCAGACATCTCCACAATGGTGACAGTGATCTGGTTGCCACGCTGTCCCAGGGCTCGGTTCTCCTTCTTCCAGTGGATATCCTGACCCTGGTAGGACAGGCC

Function

symbol description
ublcp1 Predicted to enable protein serine/threonine phosphatase activity. Predicted to be involved in protein dephosphorylation. Predicted to be active in nucleus. Orthologous to human UBLCP1 (ubiquitin like domain containing CTD phosphatase 1).

NR:

description
PREDICTED: ubiquitin-like domain-containing CTD phosphatase 1 isoform X2

GO: NA

KEGG:

id description
K17618 UBLCP1; ubiquitin-like domain-containing CTD phosphatase 1

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00011188 True 1138 mRNA 0.52 11 13328493 13343464

Neighbor

gene id symbol gene type direction distance location
AMCG00011183 NA coding downstream 136353 13186948 ~ 13192140 (-)
AMCG00011182 NA coding downstream 223938 13056733 ~ 13104555 (-)
AMCG00011179 NA coding downstream 294374 13019906 ~ 13034119 (-)
AMCG00011180 NA coding downstream 315142 13004538 ~ 13013351 (-)
AMCG00011178 slu7,LOC107741361,LOC107550887,LOC107756482,LOC107680665,LOC107676532,LOC107601502 coding downstream 329205 12988649 ~ 12999288 (-)
AMCG00011194 NA coding upstream 341170 13684634 ~ 13687704 (-)
AMCG00011200 NA coding upstream 400454 13743918 ~ 13745225 (-)
AMCG00011198 LOC105011263,LOC107750325,LOC107677389,LOC107587064 coding upstream 409089 13752553 ~ 13778757 (-)
AMCG00011203 NA coding upstream 513393 13856857 ~ 13858270 (-)
AMCG00011208 NA coding upstream 576204 13919668 ~ 13922667 (-)
G104846 NA non-coding downstream 388333 12935482 ~ 12940160 (-)
G104845 NA non-coding downstream 397410 12928672 ~ 12931083 (-)
G104776 NA non-coding downstream 564826 12761045 ~ 12763667 (-)
G104697 NA non-coding downstream 804135 12523837 ~ 12524358 (-)
G104680 NA non-coding downstream 835392 12429965 ~ 12493101 (-)
G104915 NA non-coding upstream 32669 13376133 ~ 13376997 (-)
G104916 NA non-coding upstream 34593 13378057 ~ 13378299 (-)
G104921 NA non-coding upstream 209976 13553440 ~ 13555074 (-)
G104928 clint1a,LOC108441628 non-coding upstream 318722 13662186 ~ 13667716 (-)
G104998 rpl26l1,rl26,LOC105024418,LOC107381811,LOC100708525,LOC103144500 non-coding upstream 521057 13864521 ~ 13867615 (-)
AMCG00011174 slc23a1,pwwp2a,LOC106603911,LOC102781148 other downstream 372226 12942390 ~ 12956267 (-)
AMCG00011169 NA other downstream 501613 12821025 ~ 12826880 (-)
G104749 NA other downstream 688266 12634856 ~ 12640227 (-)
G104715 NA other downstream 779500 12548289 ~ 12548993 (-)
AMCG00011152 kcnip1 other downstream 871166 12427993 ~ 12457327 (-)
G104909 NA other upstream 21619 13365083 ~ 13367074 (-)
G104929 NA other upstream 322331 13665795 ~ 13679262 (-)
AMCG00011211 NA other upstream 650519 13993983 ~ 13996589 (-)
G105050 NA other upstream 723751 14067215 ~ 14068561 (-)
G105290 LOC108429417 other upstream 2026938 15370402 ~ 15373179 (-)

Expression


Co-expression Network