AMCG00011194


Basic Information

Item Value
gene id AMCG00011194
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 13684634 ~ 13687704 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00011194
TGAGACTGTTTGGTATCATACATCTGTATATTGTTTAACTTGACTGTTTCTGAGTCCTATCATAAACTAGTGATACAATATTGAACTGAAATGGTGACATAACATACATATTGGagaaaatcaacaataacaaccagaatttaaagtatgtgaaaataaatgcaggtgactgctttgtattattattgaatatgtattgtgtatcaGTGCTGcttttgtatatgtttgtggATTCATCTAAGAAGTTGTACAATTTAGGGCTagaccacaccacaccacattATACATTCCTGTTTATGCAATGGCACACAACACTACACTTTATAGTCGTTTGGGTCACAAAGGTGTTCTGTGGGACCTGATATGTCGCAGACTCATCATATAAACCCGCTTTTTATTGTATCACCGCCCCACTGGtcagtgtatgtgtatttttctgtgAATGGCATTTCAGTTAtagtattacaataattatgaataatacaaGAACAGGCTGCTACATGCAACACAAGTTACACCGCGTCCTCTTGCCCCCTCTAGTGGCGCGCAGGGCTCACAGCGTCCCACAGACATAAACACAGGCACATTTCCCATGGTCCCCAGCTGCGGGTCTTTCAAACATGGAGGAGACCGAGAGGAAGACAACAGAGCAGCGGCACTCAGGAGCCGGGAAGAGCGGTCCGGTGGGACGGCAACCggccgaggaggaggagggtgcaGGTCGGGACAAACCGACAGACCCGGAATCCAAACTAGACGTCACTTCCCACCAGTTCGACCCGCTGCTGGCCCTGTACGCGCCCGACGTCCCGCTGCCGTTCCCCGACGTGCGCTGCTTCAACAACATCGCCCAGTACGAGAGCTTCCTGAAGGGCGGCAGGGGCAGAGCCAAGCCCGGGAATGTGGAGAAGGCGCGGCAGAAGAAGGCCAGGAAGGGCGTCCCGGACCCGGAGAGGATCGAGCGGCTCCGCAAGCTGATGGTCAACGCGCCGCCCGAGGGAGAGGAGGCGGCGGCCCGGAGGGGCAAGAAGGCCAGGGCGCCCAAAAACGTGCTGACGCGCATGTCAGTCCACTCCGGCAGCCCACTGGGAGAGCTGTATCGCTGTGTGCAGGAGAGGATCCGGGTCAGAGTTCACATCCGCACCTTCAAAGGCCTGAGGGGGGTCTGCTCCGGCTTCCTGGTGGCGTTCGACAAGTTCTGGAACATGGCTCTGGTGGACGTTGACGAGACATACAGGAGACCTCTCCTCGGGGAGGCCATTAATCACGAGCGCGCTCTGACCATCACTCGGCTGTTCGACAGGCTGAGACTGCAGGAGTCTGGGGCCCCCGTGACGGAGGGACAGGAGAAGGCTGCAGACGGGAGCGTGGCTGCCGATAGGATGAATGCCCCCCAGCTGCGGAGATCGCCCAGGAAGAGAGCCGGCACAGACCCCAGGACTGTGCAGGGGAGTCGTGGATCAGAGGAGGCGAGGGGGACGGGGTCCAGGGGGCTAAGGGTCGCGGGTCAGGGCCACGACTCCAGTGCCCAGACAGAGGCTGGTGTCCAGCCCAGGACAGGACAGGCAAAGCCCAGGGTGGATTACCAGCAGGTCCACACCAGACACATCAACCAGCTGTTCATCCGCGGCGAGAACGTGCTGCTGGTGAACCTGCAGGAGCTGTGAGGACAGAAGAGCTGCGTCCGTGACGTTCACGCATTAATaactgtacatgtatatatgaacTGCAGAAATCTGACTGGACTCGGATATGAATTGTTTTTCCTCTTGATACTCTAACGCAGGAACAGTCATTAGGAATGGTCTTTTTCCAGCTCAGCCTCTGTCTCTAAACAACATACACGAcctaaaaaacaataaaattgattttttgctacttgtcctggagagccacagtgttAGACAGCTGTCAGCATGCTTTTGTACAAACCCTACACTACACTATAGTtcacacacaatttaaagttTTCTCCGCATGTCTTCTAAATACGATCCTTCCTGCCGCGTTGCCTGCAGTTTCCCATTCCCtccagctgagggagtcagatATCGACtttacattaaaagtaaaataaatgtctacaTGTGTTCATcgacacacattcacacttcAACGTCAAAATAATTCGCTTGCTTTCATCTACGAAAACGTAAGAATCTTGATATTAAAGTATGTGGGTATTTTGCTTTATATTCAAGATTCCTTAACGTGTGAGTAATTAATGGGAAGTTTGTGGCCTGCGTCTTTGTGATTGCAATTATAACGTTTGCATTTCTGAAACCTTGTTCACATCTGCCTCTGACCAACTGAGCTCCACTTTCTCTTTCAGTTTGTACTGTCTGTGTCCACCACCCTTATTGTGTTTTCTAGCAGACGCTCTTGTCCGGGGtgacaattgttacaatatatcccattctttttacatacaattacccattt

Function

GO: NA

KEGG:

id description

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00011194 True 2442 mRNA 0.50 4 13684634 13687704

Neighbor

gene id symbol gene type direction distance location
AMCG00011188 ublcp1,LOC106567438,LOC106603889,LOC107672805 coding downstream 341170 13328493 ~ 13343464 (-)
AMCG00011183 NA coding downstream 492494 13186948 ~ 13192140 (-)
AMCG00011182 NA coding downstream 580079 13056733 ~ 13104555 (-)
AMCG00011179 NA coding downstream 650515 13019906 ~ 13034119 (-)
AMCG00011180 NA coding downstream 671283 13004538 ~ 13013351 (-)
AMCG00011200 NA coding upstream 56214 13743918 ~ 13745225 (-)
AMCG00011198 LOC105011263,LOC107750325,LOC107677389,LOC107587064 coding upstream 64849 13752553 ~ 13778757 (-)
AMCG00011203 NA coding upstream 169153 13856857 ~ 13858270 (-)
AMCG00011208 NA coding upstream 231964 13919668 ~ 13922667 (-)
AMCG00011207 stc2 coding upstream 251655 13939359 ~ 13946548 (-)
G104928 clint1a,LOC108441628 non-coding downstream 16918 13662186 ~ 13667716 (-)
G104921 NA non-coding downstream 129560 13553440 ~ 13555074 (-)
G104916 NA non-coding downstream 306335 13378057 ~ 13378299 (-)
G104915 NA non-coding downstream 307637 13376133 ~ 13376997 (-)
G104846 NA non-coding downstream 744474 12935482 ~ 12940160 (-)
G104998 rpl26l1,rl26,LOC105024418,LOC107381811,LOC100708525,LOC103144500 non-coding upstream 176817 13864521 ~ 13867615 (-)
G105048 NA non-coding upstream 377637 14065341 ~ 14065908 (-)
G105052 NA non-coding upstream 382700 14070404 ~ 14070969 (-)
G105077 LOC106567452,LOC106603868,LOC105011253 non-coding upstream 511123 14198827 ~ 14203536 (-)
G105080 NA non-coding upstream 531251 14218955 ~ 14261910 (-)
G104929 NA other downstream 5372 13665795 ~ 13679262 (-)
G104909 NA other downstream 317560 13365083 ~ 13367074 (-)
AMCG00011174 slc23a1,pwwp2a,LOC106603911,LOC102781148 other downstream 728367 12942390 ~ 12956267 (-)
AMCG00011169 NA other downstream 857754 12821025 ~ 12826880 (-)
G104749 NA other downstream 1044407 12634856 ~ 12640227 (-)
AMCG00011211 NA other upstream 306279 13993983 ~ 13996589 (-)
G105050 NA other upstream 379511 14067215 ~ 14068561 (-)
G105290 LOC108429417 other upstream 1682698 15370402 ~ 15373179 (-)
AMCG00011251 gfpt2,LOC106611946,LOC105024910,LOC108240504,LOC107375897 other upstream 1811830 15499534 ~ 15515675 (-)
AMCG00011259 pcbd2,LOC107386701,LOC105890513,LOC106941140,LOC103129816 other upstream 2275634 15963338 ~ 15973872 (-)

Expression


Co-expression Network