AMCG00011195 (thg1l)


Basic Information

Item Value
gene id AMCG00011195
gene name thg1l
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 13687256 ~ 13691363 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00011195
ATGCCATTcacagaaaaatacacatacactgaCCAGTGGGGCGGTGATACAATAAAAAGCGGGTTTATATGATGAGTCTGCGACATATCAGGTCCCACAGAACACCTTTGTGACCCAAACGACTATAAAGTGTAGTGTTGTGTGCCATTGCATAAACAGGAATGTATaatgtggtgtggtgtggtctAGCCCTAAATTGTACAACTTCTTAGATGAATccacaaacatatacaaaagCAGCACtgatacacaatacatattcaataataatacaaagcagtcacctgcatttattttcacatactttaaattctggttgttattgttgattttctCCAATATGTATGTTATGTCACCATTTCAGTTCAATATTGTATCACTAGTTTATGATAGGACTCAGAAACAGTCAAGTTAAACAATATACAGATGTATGATACCAAACAGTCTCACTCATTGTACACTGGAAAAGTGCTCCCGGAACCAAAGTGAAGGGATGCTGTCCGCCATTGGGACATATTTGACAGTGGCACTGCTGGAGCAGGATGCGGAGGAAGAGGGAAGTGGAGTTAGTCGTTTCACAACAATAAAACGACTGGATTGGTTTAGACAGTCTTTTTAATGGGCGGATTTCAAAGTCATAACCACgcgttttattgttttaaaagctgttgATCCTCATTATAGACCAGATAAAGTGAGACGTCTGTTGGTGCAACCCGTATAAACTCCGCTCCACGTGTGCGGTTGCTACAGATATGACTGTCACAGCGGGTAGTTGATGCTGCTGCGGATCTCTGGGTGGTTGTGTGCGACCCGCTGGCGAGCAGACCGGAAGTGCTCCCTGGCTCTCAGCAGCTCGGCCATGGCCAAGAGCAAGTTCGAGTACGTGCGCGGCTTCGAGACGGACGACACCTGCCTGCGCAACTGCTACATCGTGGTGCGGCTGGATGGGAGGAACTTCCACAAATTTGCAGAGCAGCATGACTTTGCGAAGCCCAACGATGACCGCGCTCTGGGCCTGATGACACGCAGCGCCCGCTCGGTGATGGAGGCGCTGGAGGACGTCGTGGTGGCCTATGGGCAGAGCGATGAGTACAGCTTCGTCTTCAAGAGGAGCTCCAACTGGTTCAAGAGGAGGGCCAGCAAGTTGATGACTCATGTGGCCTCACAGTTCTCCTCCAGCTACGTTTTCTACTGGAGGGATTTCTTCGGGGAGCAGGAGTTGCTGTACCCCCCCGGGTTCGACGGCAGGGTGGTGCTGTACCCCAGCAACCAAAACCTGAGGGACTACCTGAGCTGGAGGCAGGCTGACTGCCACATCAATAATCTGTACAACACAGTGTTTTGGAGTCTGGTTCAAAAGGGCGGACTGACGACGGCACAGGCAGAGGAGAGATTGAGGGGCACCATGGCAGCTGATAAAAATGAGATTCTGTTTTCGGAGTTCAACATCAACTACAACAACGAGCCCCTTGTGCACAGGAAAGGCACCGTGCTAGTCTGGAAAAAGtttgatgAAACCACGACCAAACAGATAAAGCTGCCCCATGAGGAGAAGGGGAAGGACGTGGTGGTGACTCGGACTCGGACCAAAGTGGTGGAGCAGCATTGTGACCTCATCGGGGACCAGTTCTGGGACGAACACCCAGAGGTTCTGGAAGGAGACCGCTAGCTGACTCGGCACATCCCCCCCAGTTTTTTAATGAGAGGCTTGAGCAGAGAGGGTCCAAGCACAGGGGCTGTTTTGCTCTCACACCCAGAAACACAAGGCCTGACTAAAACCCTGGCCAGGTGTTCATTTTGTGTAGTGAAACCCTGGCCAATATTGTCTTTCATCGAAACGTTGAACAGAACTCTTAGTTGGGATTAATGCCTTTCATTTAAGATGGAGGGTGCCGACTAATAAACAAAGGCAACAGTGAAGATGGGGTTTGAGCTCCGAACAGCCGTGCTGAAGAAGACCGGCTTGTTCTGCCCAGGTCTGGCACAGCAGCGGCTTCCCTGACAGAGAAGCCTTGATCCAGAAGTAGCCCTGGGGTCCCACTATGGACACACATCTGCTGTTCACACTGGTTCTATACTGGTAGGTCTCAATTAGGATTATACTGTATggttattaataaaacagagtGACCTAATCAACACCAGA

Function

symbol description
thg1l Predicted to enable tRNA guanylyltransferase activity. Predicted to be involved in tRNA processing. Predicted to act upstream of or within tRNA modification. Human ortholog(s) of this gene implicated in autosomal recessive cerebellar ataxia. Orthologous to human THG1L (tRNA-histidine guanylyltransferase 1 like).

NR:

description
PREDICTED: probable tRNA(His) guanylyltransferase isoform X3

GO:

id name namespace
GO:0006400 tRNA modification biological_process
GO:0008193 tRNA guanylyltransferase activity molecular_function
GO:0000287 magnesium ion binding molecular_function

KEGG:

id description
K10761 THG1; tRNA(His) guanylyltransferase

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00011195 True 2149 mRNA 0.49 7 13687256 13691363

Neighbor

gene id symbol gene type direction distance location
AMCG00011193 NA coding upstream 9665 13660924 ~ 13677591 (+)
AMCG00011190 ebf1,LOC107669108,LOC107723797 coding upstream 142973 13538248 ~ 13544283 (+)
AMCG00011191 LOC107595778,LOC103481132,LOC106906007,LOC107749771,LOC106521921,LOC100695038,LOC106611650,LOC105028844 coding upstream 181736 13502635 ~ 13505520 (+)
AMCG00011192 NA coding upstream 194800 13487946 ~ 13492456 (+)
AMCG00011189 ebf1 coding upstream 307461 13376591 ~ 13379795 (+)
AMCG00011199 NA coding downstream 473 13691836 ~ 13696708 (+)
AMCG00011196 NA coding downstream 16161 13707524 ~ 13721661 (+)
AMCG00011197 tcerg1,LOC102783943 coding downstream 31176 13722539 ~ 13742007 (+)
AMCG00011202 pcyox1l,LOC107581983,LOC103475662 coding downstream 160078 13851441 ~ 13854844 (+)
AMCG00011201 rpl26l1,rl26,LOC103040128,LOC100708525,LOC105024418,LOC107697626 coding downstream 173252 13864615 ~ 13867345 (+)
G104923 NA non-coding upstream 7876 13665947 ~ 13679380 (+)
G104910 NA non-coding upstream 132200 13553401 ~ 13555056 (+)
G104883 NA non-coding upstream 457840 13186948 ~ 13229416 (+)
G104835 NA non-coding upstream 668192 13018792 ~ 13019064 (+)
G104814 NA non-coding upstream 747086 12935436 ~ 12940170 (+)
G104979 NA non-coding downstream 166468 13857831 ~ 13858192 (+)
G104980 NA non-coding downstream 167288 13858651 ~ 13858982 (+)
G105046 NA non-coding downstream 371337 14062700 ~ 14063157 (+)
G105051 NA non-coding downstream 379037 14070400 ~ 14070969 (+)
G105078 LOC103376870 non-coding downstream 527587 14218950 ~ 14262016 (+)
G104815 slc23a1,pwwp2a,LOC106603911,LOC102781148 other upstream 744174 12942380 ~ 12943082 (+)
AMCG00011163 reep2,LOC107557670,LOC107588406 other upstream 1007827 12670376 ~ 12679429 (+)
G104719 NA other upstream 1068201 12610129 ~ 12619055 (+)
G104694 NA other upstream 1160225 12525360 ~ 12527031 (+)
AMCG00011141 LOC567622,LOC108413244,LOC103367052,LOC101466533,LOC107379323 other upstream 1546791 12067451 ~ 12140465 (+)
AMCG00011204 NA other downstream 176974 13868337 ~ 13878282 (+)
AMCG00011210 bod1,LOC107581912,LOC107661728,LOC107713186,LOC107662284,LOC107587245,LOC108278584,LOC106603873 other downstream 294302 13985665 ~ 13992845 (+)
AMCG00011209 cpeb4,LOC106603870 other downstream 321758 14013121 ~ 14061027 (+)
G105139 LOC100846954 other downstream 928327 14619690 ~ 14620534 (+)
AMCG00011241 LOC102221627,LOC107740141,LOC107680337,LOC107593202 other downstream 1629417 15320780 ~ 15322658 (+)

Expression


Co-expression Network