AMCG00011203


Basic Information

Item Value
gene id AMCG00011203
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 13856857 ~ 13858270 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00011203
ATGGATGCTATGCACGTCCTGCCCACTATAAAGCACTGCTTTTTGTCCCCTGTCCCCCTGTCCCCTCGGCTCCAGCTGCTGGTGGTTGTCCTCCTGCTGTCCGCGGCGCTGGTGCTGCTGGCGGAGTCCCGGGAGCGGCGCAAGGACGGCCGGGCAGCGCGCAAGAGGCCCGGGCGCGTCAAGGACAAGAGCGCCCCACCGGGACGCCAAAACGGCACCCTGTTCAACATCTCCCCGGACCCGGTCCTGGCGGGGGTGAAGCCGGTGGTGGACCTGGCGACGGGCGAGACGCAGCCGGCTTGGGAGGAAGACTACGAGAAGAGCATCGGCGATATGGTGGCGCAAGTGCTGAACAACTCGGCGTTGTCCAAGAACAAGTGTGCGGTGGACCGGCGCCTGTGGATGTCCAACACCCGCAGTCTGTCTCCCTGGTCGTACAGCATCAACCACGACGAGAACCGCATCCCGGTGGACATTCCCGAAGCCCAGTGCTCATGCGCCGGCTGCATCAACCCCTTCACCATGCAGGAGGACCGCACCATGAACAGCGTGCCCATCTACACCAAGATCCCCGTGCGCAGGCTGCTGTGCGACAAGAGGGGCAAGAAGccgaggaggaagaagaagaagaagtgcGGCACGGAGTACAGGACAGTGGTGGAGTACATCGCGGTGGGCTGCACCTGTATTGTCTGA

Function

GO: NA

KEGG:

id description
K05490 IL17B, CX1; interleukin 17B

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00011203 True 696 mRNA 0.64 2 13856857 13858270

Neighbor

gene id symbol gene type direction distance location
AMCG00011198 LOC105011263,LOC107750325,LOC107677389,LOC107587064 coding downstream 78100 13752553 ~ 13778757 (-)
AMCG00011200 NA coding downstream 111632 13743918 ~ 13745225 (-)
AMCG00011194 NA coding downstream 169153 13684634 ~ 13687704 (-)
AMCG00011188 ublcp1,LOC106567438,LOC106603889,LOC107672805 coding downstream 513393 13328493 ~ 13343464 (-)
AMCG00011183 NA coding downstream 664717 13186948 ~ 13192140 (-)
AMCG00011208 NA coding upstream 61398 13919668 ~ 13922667 (-)
AMCG00011207 stc2 coding upstream 81089 13939359 ~ 13946548 (-)
AMCG00011216 LOC107713182,LOC107587250,LOC107684217,LOC107581908,LOC107661723,LOC108429399,LOC107727287 coding upstream 353355 14211625 ~ 14340740 (-)
AMCG00011222 stk32a,LOC107692947,LOC108414397,LOC107713578 coding upstream 606887 14465157 ~ 14467077 (-)
AMCG00011223 stk32a,LOC104947536,LOC106965095 coding upstream 624100 14482370 ~ 14489581 (-)
G104928 clint1a,LOC108441628 non-coding downstream 189141 13662186 ~ 13667716 (-)
G104921 NA non-coding downstream 301783 13553440 ~ 13555074 (-)
G104916 NA non-coding downstream 478558 13378057 ~ 13378299 (-)
G104915 NA non-coding downstream 479860 13376133 ~ 13376997 (-)
G104846 NA non-coding downstream 916697 12935482 ~ 12940160 (-)
G104998 rpl26l1,rl26,LOC105024418,LOC107381811,LOC100708525,LOC103144500 non-coding upstream 6251 13864521 ~ 13867615 (-)
G105048 NA non-coding upstream 207071 14065341 ~ 14065908 (-)
G105052 NA non-coding upstream 212134 14070404 ~ 14070969 (-)
G105077 LOC106567452,LOC106603868,LOC105011253 non-coding upstream 340557 14198827 ~ 14203536 (-)
G105080 NA non-coding upstream 360685 14218955 ~ 14261910 (-)
G104929 NA other downstream 177595 13665795 ~ 13679262 (-)
G104909 NA other downstream 489783 13365083 ~ 13367074 (-)
AMCG00011174 slc23a1,pwwp2a,LOC106603911,LOC102781148 other downstream 900590 12942390 ~ 12956267 (-)
AMCG00011169 NA other downstream 1029977 12821025 ~ 12826880 (-)
G104749 NA other downstream 1216630 12634856 ~ 12640227 (-)
AMCG00011211 NA other upstream 135713 13993983 ~ 13996589 (-)
G105050 NA other upstream 208945 14067215 ~ 14068561 (-)
G105290 LOC108429417 other upstream 1512132 15370402 ~ 15373179 (-)
AMCG00011251 gfpt2,LOC106611946,LOC105024910,LOC108240504,LOC107375897 other upstream 1641264 15499534 ~ 15515675 (-)
AMCG00011259 pcbd2,LOC107386701,LOC105890513,LOC106941140,LOC103129816 other upstream 2105068 15963338 ~ 15973872 (-)

Expression


Co-expression Network