AMCG00011204


Basic Information

Item Value
gene id AMCG00011204
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 13868337 ~ 13878282 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00011204
CCAACGCGACCTATGGATGTGACGCATTAGCCCCTCGACTGCACCGCGTCATGTGACCTGCGCTTCCCCACTGCGGGCAGTTCCTGCTGGAGTTGCCGAGACTGGAGTTTCTTTCCGCACTAGTTTGTGACTCCGGACAGAAGAGTTGCTATTTCTGTTTCAAAGTTATTAAACCGCTTCTCCCCCTTCCCGAGACGGTGAACCGGAGCAATACCCGCCATGGAGAACCTCAACTTTGCCATCCCCATGATCGTGATGTCGGTGTTTTGGGCAATAGTTGGGGGAGTTCTGCCGTTTTTCATTCGGAAGGGGCCGAATCGAGGggtgATCATCACGATGCTGATAACGTGTGCGGTCTGCTGCTATCTCTTCTGGCTGATTGCAATCCTCGCCCAGCTGAATCCTCTCTTTGGGCCACAGTTGTCCAATAACACCATCTGGTTCCTGCAGTACCACTGGCCTTAAACCCCCCCCCAGAGCCCCTCCGCACCTCTCCCTGTACAGAACTTTCTACTGTTTTGCTGCTCTCCTCCCACGAGTTGTTCAGTGTGACGGGATCATTCCTTATAGCTCCGATTGCCTTACCTGAAAAGAGCTGTGTGCCCTCCTTAAGGACAGTGAGAAAGCGAGCATAAATTACATTGAAGTATTTGTACAACTTCATCCAAGTCCTGCCCCCCCAACCCTCTTTGAGATGTATTAAAATTGTTAATGTACATTCTGCCTTTTATTCTGTGAACTGTGTGTCTTAATGACTAATCTGTGTGCCTGAGAATGTAGTGATTCACAAGGCACTGCCAGGGATCCTCAGAATGCATTGGTAGACCTGCTTAGACCTGGCAgtggtaaatatttattttattcctaaTGTGTGAACCTCAAAATACGTTGTCCTTAACATTTTgtctgaatgtttttcttttctttttttccccttaatgaaagcaattaaaCTATTGTGGAATTAAGTCTTGGTTCCATTATTCCAGTTTTACTTATGtgcatgtaatttatatatgtatacacaacTGGGACTGGACTGAGTGCCTTGCTATTTTATAttcaatgctttaaaaaaggcactttttacttttgtttcaggatgaacaaaataatattggGGTGGAAATTGACTGTAATGGCAACTAAGTATGATGCTTCTCTGTTTTTTGCCCCCCAAAATTGCATTGAAGAGAATGGGAGAGCTTCTGAACTGTTGAGGGCAGACCGTGTGGAAACCCCCTGAGCACGTGCAGGGATTGCAGCTGCAGGTGGCGGTTTcttctgttgtatttttaatggagGAAGATTGAAGCTGTACTGAAATTGTGAAAAGGGAACTCCTGTTCAGtggtgttttcttgttttgcccCCTCTCTCAGTGCATTGATCgtactgaacaaaaatgttcacaGCCGATGTTTACAATTGCGGTTTAAGATATAACACTCTGAAAAGGGGgggataaaataaacattcacttTGTCTGCATGCAGAAGaaataacttcaattaaggtttcagtaatttaaaaaagggttTGGGTTAGATTCTAAACAAATCACCCCTGACGGTCTCCTATCGGATCTCTTAGATTCAGATATCAAACAACTTTAGTGTAATCTGCCCAGATCTATCAAGAACTGCATGTTTACAGTTGGCAATTTTTGAAACGTTTTCTTCCTGCGCAAAATATTCTCTCCCATTGTATGAACATGCAAACTGAGCAAGAAAGTATGTAgatatgcaaaacatttagtACACCttcaaaatgaatgtgattCTGCCTACATAGtggttattttaaagtttatttagatttgaaatgctgcattggaaaagaaaatcaaaagtCATGCTGGAAATTAATTTGGCTCAAGAATTCTACCACCACgtgttgcatttttatataatctGAAGATGGTGAAGCTGGGCCAGAATCTATATAAACCAAGACTGGGATTTGTCAATGGGCTTGTCATTGTCTGCAACACCCACAGCTCTCTTGTTATGTAACTCTTGGGGGTTTAGATAGGAGAAGAAAAAGGGCTTGTCTGTTATGGTTAAGCCTCACATGATTTCTGATCCATGACATAATGTCAGGAGAGCTGGCTGGGTATGAGGGGCAGCTGATACATAGGTTCCTGTACAGGAGAAAGGAGCTATATTGGGTCGTCTCTTTAGAAACCCCCACGGGTGTCAgcggaaaagaaaaagcaggaaaaaaactGCCACAATCTTAACCCCAAAACTTGCACCTtcatttaagaaatacatacaaatcaccACTGACTGAATTACAGCAACCACACTGGAGGCAAAGCTGTGTATTTTGTGAAGGTGTGGATATGCAGTCTGCTTGCTTGGAAATAACTTATTGCCTCTATGTAATGGATGAGCctgctttttaaatacagtcACAGGTGTTCTGATCTAAATGCAggaggttttgtatttttgtaacttgTGAATCAGGTCAATGCATCTCACAAAAGACTAGCATTTGAGCCTCTGTTGTCCAGCATGCTTGATCTGCACAACCCCACAACAATATCATGGAGTCAAACAGGCAAGGCAAGCAATATTTCTGTTATCCTTTTTGTGCATGCCACAGCTGCATGATGCAAGTCGTGAAATAAATGGAGTCATCTTGTCTTTATGTGTGATTTTAGTACAGAAGGACTTCAATAAAAGTGTGTcagtggaaaaagaaaaacatcactgctacatgattttgaaatgtggGGGTGGGTGTAAAGTTTGGATGAGAGAAAAGCAGTCATAAGAGCTTTGCAATGGTGACTCAGAAAGGTGGATGTATGAGGAAGCAATTATCACTAGGGGAAGGGGAGAGCTTGAATAGAAATACACTACATTGCTTTGTCTCTGTTTATAATGGCTTATACTAGAGGCCATGGGATTAATGGAGTATTTTTCAGGGCACCTTGAGCTTCTTGTCATACTGTTATTCTGCTGgaaaaaattgtattataattaaaggGACCtcaatttgtattgaaatacatatactaaatgataaaactgaataaatgattGTGttctatacaaatatattaccTTTATCAAGAGC
>TU131317
CCCCACTGCGGGCAGTTCCTGCTGGAGTTGCCGAGACTGGAGTTTCTTTCCGCACTAGTTTGTGACTCCGGACAGAAGAGTTGCTATTTCTGTTTCAAAGTTATTAAACCGCTTCTCCCCCTTCCCGAGACGGTGAACCGGAGCAATACCCGCCATGGAGAACCTCAACTTTGCCATCCCCATGATCGTGATGTCGGTGTTTTGGGCAATAGTTGGGGGAGTTCTGCCGTTTTTCATTCGGAAGGGGCCGAATCGAGGggtgATCATCACGATGCTGATAACGTGTGCGGTCTGCTGCTATCTCTTCTGGCTGATTGCAATCCTCGCCCAGCTGAATCCTCTCTTTGGGCCACAGTTGTCCAATAACACCATCTGGTTCCTGCAGTACCACTGGCCTTAAACCCCCCCCCAGAGCCCCTCCGCACCTCTCCCTGTACAGAACTTTCTACTGTTTTGCTGCTCTCCTCCCACGAGTTGTTCAGTGTGACGGGATCATTCCTTATAGCTCCGATTGCCTTACCTGAAAAGAGCTGTGTGCCCTCCTTAAGGACAGTGAGAAAGCGAGCATAAATTACATTGAAGTATTTGTACAACTTCATCCAAGTCCTGCCCCCCCAACCCTCTTTGAGATGTATTAAAATTGTTAATGTACATTCTGCCTTTTATTCTGTGAACTGTGTGTCTTAATGACTAATCTGTGTGCCTGAGAATGTAGTGATTCACAAGGCACTGCCAGGGATCCTCAGAATGCATTGGTAGACCTGCTTAGACCTGGCAgtggtaaatatttattttattcctaaTGTGTGAACCTCAAAATACGTTGTCCTTAACATTTTgtctgaatgtttttcttttctttttttccccttaatgaaagcaattaaaCTATTGTGGAATTAAGTCTTGGTTCCATTATTC

Function

GO: NA

KEGG:

id description
K02153 ATPeV0E, ATP6H; V-type H+-transporting ATPase subunit e

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00011204 True 3090 mRNA 0.41 4 13868337 13878282
TU131317 False 921 lncRNA 0.46 4 13868402 13876178

Neighbor

gene id symbol gene type direction distance location
AMCG00011201 rpl26l1,rl26,LOC103040128,LOC100708525,LOC105024418,LOC107697626 coding upstream 992 13864615 ~ 13867345 (+)
AMCG00011202 pcyox1l,LOC107581983,LOC103475662 coding upstream 13493 13851441 ~ 13854844 (+)
AMCG00011197 tcerg1,LOC102783943 coding upstream 126330 13722539 ~ 13742007 (+)
AMCG00011196 NA coding upstream 146676 13707524 ~ 13721661 (+)
AMCG00011199 NA coding upstream 171629 13691836 ~ 13696708 (+)
AMCG00011205 crebrf,LOC106603875 coding downstream 13472 13891754 ~ 13900038 (+)
AMCG00011206 sec20,bnip1b,LOC105011259,LOC106603874,LOC106567448,LOC107727279,LOC108441621,LOC107587246 coding downstream 31450 13909732 ~ 13914186 (+)
AMCG00011212 NA coding downstream 194086 14072368 ~ 14076417 (+)
AMCG00011213 LOC106567451,LOC106603869,LOC107661726,LOC108441632,LOC107713183,LOC107662844,LOC107587249 coding downstream 216873 14095155 ~ 14096053 (+)
AMCG00011214 NA coding downstream 318253 14196535 ~ 14196906 (+)
G104980 NA non-coding upstream 9355 13858651 ~ 13858982 (+)
G104979 NA non-coding upstream 10145 13857831 ~ 13858192 (+)
G104923 NA non-coding upstream 188957 13665947 ~ 13679380 (+)
G104910 NA non-coding upstream 313281 13553401 ~ 13555056 (+)
G104883 NA non-coding upstream 638921 13186948 ~ 13229416 (+)
G105046 NA non-coding downstream 184418 14062700 ~ 14063157 (+)
G105051 NA non-coding downstream 192118 14070400 ~ 14070969 (+)
G105078 LOC103376870 non-coding downstream 340668 14218950 ~ 14262016 (+)
G105113 NA non-coding downstream 577820 14456102 ~ 14459018 (+)
G105143 NA non-coding downstream 786338 14664620 ~ 14665153 (+)
G104815 slc23a1,pwwp2a,LOC106603911,LOC102781148 other upstream 925255 12942380 ~ 12943082 (+)
AMCG00011163 reep2,LOC107557670,LOC107588406 other upstream 1188908 12670376 ~ 12679429 (+)
G104719 NA other upstream 1249282 12610129 ~ 12619055 (+)
G104694 NA other upstream 1341306 12525360 ~ 12527031 (+)
AMCG00011141 LOC567622,LOC108413244,LOC103367052,LOC101466533,LOC107379323 other upstream 1727872 12067451 ~ 12140465 (+)
AMCG00011210 bod1,LOC107581912,LOC107661728,LOC107713186,LOC107662284,LOC107587245,LOC108278584,LOC106603873 other downstream 107383 13985665 ~ 13992845 (+)
AMCG00011209 cpeb4,LOC106603870 other downstream 134839 14013121 ~ 14061027 (+)
G105139 LOC100846954 other downstream 741408 14619690 ~ 14620534 (+)
AMCG00011241 LOC102221627,LOC107740141,LOC107680337,LOC107593202 other downstream 1442498 15320780 ~ 15322658 (+)
AMCG00011250 NA other downstream 1593977 15472259 ~ 15487372 (+)

Expression


Co-expression Network