AMCG00011206 (sec20,bnip1b,LOC105011259,LOC106603874,LOC106567448,LOC107727279,LOC108441621,LOC107587246)


Basic Information

Item Value
gene id AMCG00011206
gene name sec20,bnip1b,LOC105011259,LOC106603874,LOC106567448,LOC107727279,LOC108441621,LOC107587246
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 13909732 ~ 13914186 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00011206
AGGCGTTTCCTGACGTGCTTGAACCTCTCGGCGTGCCGTACTGCACTTTCAAAGATGGCCGCTTCTCCGGATGTTCATGTCCGTATTTGTGGACAAGAAATAATCAAATACGATTTGGAAATTAAAGCGCTCATTCAGGACATCAGAGAATGCCCGGGTCCACAGACCGTGCTCACGGATTTAAACTCCAAAGTGAAGGAGAAATTCAACCGGCTCAGACTGAGGATCCAGGATCTGGAGCAGATGGCCAAAGAGCAGGATAAGGAGTCGGACAAGCTCGCTATATTGCAGGAAACGGAAGCTCATCGCAAGCAAATGCTGAGTAACCAGACAGCCTGGAGGAAAGCTAATTTGTCATGCAAACTTGCCATTGATTATCTAGAGAAGGATGAACTGCTACAAGGTGGAGACTCTTCAGTGAGGCAGAGAAAGACCACAAAGGAGAGCTTGGCCCAGAGCACCAGCGGCATCACGGAGAGTTTGATGAGCATCAGCAGGATGATGTCACAGCAAGTCCAGCAGAGCGAGGAGACCGTGGGCAGCCTGGCCACTTCCTCAAGGACAGTGCTGGAGACCAACGAGGAGTTTAAGGCCATGACAGGGACCATTCAGCTGGGACGCAAGCTGATCACAAAATACAACCGGAGGGAGTTTACTGACAAGCTGCTTATTTACCTGGCTGTGGCTCTGTTTGTGGCCACagtgctgtacattttaaagaaaaggcTCTTCCCCTTCCTCtagggggagacagagacagaggagggtgggggggaggacagaaaatgaagaaaagcaaaCTTGCGCAGCAGTACCATCCTAAATCCCCTCCAGCAAAGTCACCATTCCCTATCACCCCAGCCAGGATCATTTACCCTACTGCATTCTCAGAAGACTTGTTGAATTGACACCCCAACGCTTACGAACATTTAGTGTGGGTCCCGTGGTCAGAACCGGGCCACGGACCaacatttaatcagtttttaaGATATGAACGGCAGAGTGCAGTCTACTACTATTAACCAATAATTCTTCATTGCCACACTGGTAGAAAATATATACTCTTTTGTATGATAATTGAAAACTGCAGTTTTGGTTAGctgattgatttaataaatgttataattttgtCTTTAATCCTCAATGATTATATgtagtgcattaaaaaaaaacaaaaaaaaaacgtgtaaataatgtatctaaagcacaaagtatttgtattcatgttaaTTTATGCAAGGGACGTATTTCCTTTGATGTACTGTGCCTTCTTCAGAATCCAGTTTGTGCAGGCAATGCTCCTCAGTCTGTGTTTTGTCAATAACACGGTAGGATGTACAGAACAAATAATGTGCCTAATGTACAGAATAAATGCTCTTAGATTTAAAACTCCTTGTCTTCATCTGATGTGAATTTCCTGCGAGGCCA

Function

symbol description
bnip1b Enables protein heterodimerization activity. Predicted to be involved in retrograde vesicle-mediated transport, Golgi to endoplasmic reticulum. Located in endoplasmic reticulum. Is expressed in head; optic cup; and retina. Orthologous to human BNIP1 (BCL2 interacting protein 1).
sec20 Predicted to enable SNAP receptor activity. Predicted to be involved in endoplasmic reticulum membrane fusion and retrograde vesicle-mediated transport, Golgi to endoplasmic reticulum. Predicted to be part of SNARE complex. Predicted to be active in endoplasmic reticulum. Is expressed in adult head and adult heart. Orthologous to human BNIP1 (BCL2 interacting protein 1).

NR:

description
PREDICTED: vesicle transport protein SEC20 isoform X1

GO: NA

KEGG:

id description
K08497 SEC20; protein transport protein SEC20

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00011206 True 1428 mRNA 0.45 6 13909732 13914186

Neighbor

gene id symbol gene type direction distance location
AMCG00011205 crebrf,LOC106603875 coding upstream 9694 13891754 ~ 13900038 (+)
AMCG00011201 rpl26l1,rl26,LOC103040128,LOC100708525,LOC105024418,LOC107697626 coding upstream 42387 13864615 ~ 13867345 (+)
AMCG00011202 pcyox1l,LOC107581983,LOC103475662 coding upstream 54888 13851441 ~ 13854844 (+)
AMCG00011197 tcerg1,LOC102783943 coding upstream 167725 13722539 ~ 13742007 (+)
AMCG00011196 NA coding upstream 188071 13707524 ~ 13721661 (+)
AMCG00011212 NA coding downstream 158182 14072368 ~ 14076417 (+)
AMCG00011213 LOC106567451,LOC106603869,LOC107661726,LOC108441632,LOC107713183,LOC107662844,LOC107587249 coding downstream 180969 14095155 ~ 14096053 (+)
AMCG00011214 NA coding downstream 282349 14196535 ~ 14196906 (+)
AMCG00011217 NA coding downstream 373570 14287756 ~ 14305622 (+)
AMCG00011215 sfxn1 coding downstream 452254 14366440 ~ 14379806 (+)
G104980 NA non-coding upstream 50750 13858651 ~ 13858982 (+)
G104979 NA non-coding upstream 51540 13857831 ~ 13858192 (+)
G104923 NA non-coding upstream 230352 13665947 ~ 13679380 (+)
G104910 NA non-coding upstream 354676 13553401 ~ 13555056 (+)
G104883 NA non-coding upstream 680316 13186948 ~ 13229416 (+)
G105046 NA non-coding downstream 148514 14062700 ~ 14063157 (+)
G105051 NA non-coding downstream 156214 14070400 ~ 14070969 (+)
G105078 LOC103376870 non-coding downstream 304764 14218950 ~ 14262016 (+)
G105113 NA non-coding downstream 541916 14456102 ~ 14459018 (+)
G105143 NA non-coding downstream 750434 14664620 ~ 14665153 (+)
AMCG00011204 NA other upstream 31450 13868337 ~ 13878282 (+)
G104815 slc23a1,pwwp2a,LOC106603911,LOC102781148 other upstream 966650 12942380 ~ 12943082 (+)
AMCG00011163 reep2,LOC107557670,LOC107588406 other upstream 1230303 12670376 ~ 12679429 (+)
G104719 NA other upstream 1290677 12610129 ~ 12619055 (+)
G104694 NA other upstream 1382701 12525360 ~ 12527031 (+)
AMCG00011210 bod1,LOC107581912,LOC107661728,LOC107713186,LOC107662284,LOC107587245,LOC108278584,LOC106603873 other downstream 71479 13985665 ~ 13992845 (+)
AMCG00011209 cpeb4,LOC106603870 other downstream 98935 14013121 ~ 14061027 (+)
G105139 LOC100846954 other downstream 705504 14619690 ~ 14620534 (+)
AMCG00011241 LOC102221627,LOC107740141,LOC107680337,LOC107593202 other downstream 1406594 15320780 ~ 15322658 (+)
AMCG00011250 NA other downstream 1558073 15472259 ~ 15487372 (+)

Expression


Co-expression Network