AMCG00011207 (stc2)


Basic Information

Item Value
gene id AMCG00011207
gene name stc2
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 13939359 ~ 13946548 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00011207
ATGTTAGTGAAATTGGCACTAGTCCTGCTGGTTTTCACTGTCGCTGAACAAGTAGTGGGGACGGATAATATTGAGCTTCACGAAAACCCCCAAGAAAAGCCGGCTAACCAGCAGAAGGGGCGCCTTTCTCTGCAAAACACAGCCGAGATCCAGCACTGCTTGGTCAATGCTGGGGACGTGGGCTGCGGCGTGTTTGAGTGCTTCGAGAACAACTCCTGCGAGATCAGAGGATTGCAAGAGATCTGCATGACTTTCCTTCACAATGCAGGGAAGTTCGATTCCCAgGGCAAGTCCTTCATCAAAGACGCCCTCAAGTGCATGGCCCATGGACTGAGGCACCGCTTCAGCTGCATCAGCCGCAAGTGCCCGGCCATCAAGGAGATGGTGTTCCAGCTGCAGAGGGAGTGCTACGTCAAGCACAACCTGTGCTCCGCCGCCAAAGACAACGTCAACGTCATGGTGGAGATGATTCACTTCCAAGATCTGTTTCCGAAAGGGCCCTACGTGGAGCTGGTGAACATCCTGCTGGGCTGcggggaggaggtgagggaggcaCTGATCCGCAGCGTGCGGCAGCAGTGCGAGCAGAACTGGGGCGCCCTGTGTGACAGCCTCAGCTTCTGCCCCCTGGGGCGGCCCGACGAGCACCCCTCCCCCGTCACCCCCCCACCCGAGCGGAGACACGCGGaccccccccaccgccccgGCAACAGAGGAACGCTGGACCCGGCCCAGACGCAGCCCGAGGCCGAGAGGGAGGCCTCCAGGACCTCCAGGCAGGGCGAGAAGGAGAAGGGGGCAAAGGCGCACAGTCGCAGGGGACAGGCTCCGAGGCGCGGCAACAGCGAGGCAGACCGGGCGGAGCAGGAAGAGCCTGAGAACACCGACATCCGGAGGTGA

Function

symbol description
stc2 Enables enzyme binding activity; heme binding activity; and protein homodimerization activity. Involved in negative regulation of gene expression and regulation of hormone biosynthetic process. Located in endoplasmic reticulum and perinuclear region of cytoplasm.

NR:

description
PREDICTED: stanniocalcin-2 isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00011207 True 900 mRNA 0.61 4 13939359 13946548

Neighbor

gene id symbol gene type direction distance location
AMCG00011208 NA coding downstream 16692 13919668 ~ 13922667 (-)
AMCG00011203 NA coding downstream 81089 13856857 ~ 13858270 (-)
AMCG00011198 LOC105011263,LOC107750325,LOC107677389,LOC107587064 coding downstream 160602 13752553 ~ 13778757 (-)
AMCG00011200 NA coding downstream 194134 13743918 ~ 13745225 (-)
AMCG00011194 NA coding downstream 251655 13684634 ~ 13687704 (-)
AMCG00011216 LOC107713182,LOC107587250,LOC107684217,LOC107581908,LOC107661723,LOC108429399,LOC107727287 coding upstream 265077 14211625 ~ 14340740 (-)
AMCG00011222 stk32a,LOC107692947,LOC108414397,LOC107713578 coding upstream 518609 14465157 ~ 14467077 (-)
AMCG00011223 stk32a,LOC104947536,LOC106965095 coding upstream 535822 14482370 ~ 14489581 (-)
AMCG00011230 NA coding upstream 599523 14546071 ~ 14576028 (-)
AMCG00011231 NA coding upstream 702830 14649378 ~ 14676424 (-)
G104998 rpl26l1,rl26,LOC105024418,LOC107381811,LOC100708525,LOC103144500 non-coding downstream 71744 13864521 ~ 13867615 (-)
G104928 clint1a,LOC108441628 non-coding downstream 271643 13662186 ~ 13667716 (-)
G104921 NA non-coding downstream 384285 13553440 ~ 13555074 (-)
G104916 NA non-coding downstream 561060 13378057 ~ 13378299 (-)
G104915 NA non-coding downstream 562362 13376133 ~ 13376997 (-)
G105048 NA non-coding upstream 118793 14065341 ~ 14065908 (-)
G105052 NA non-coding upstream 123856 14070404 ~ 14070969 (-)
G105077 LOC106567452,LOC106603868,LOC105011253 non-coding upstream 252279 14198827 ~ 14203536 (-)
G105080 NA non-coding upstream 272407 14218955 ~ 14261910 (-)
G105105 NA non-coding upstream 473153 14419701 ~ 14420053 (-)
G104929 NA other downstream 260097 13665795 ~ 13679262 (-)
G104909 NA other downstream 572285 13365083 ~ 13367074 (-)
AMCG00011174 slc23a1,pwwp2a,LOC106603911,LOC102781148 other downstream 983092 12942390 ~ 12956267 (-)
AMCG00011169 NA other downstream 1112479 12821025 ~ 12826880 (-)
G104749 NA other downstream 1299132 12634856 ~ 12640227 (-)
AMCG00011211 NA other upstream 47435 13993983 ~ 13996589 (-)
G105050 NA other upstream 120667 14067215 ~ 14068561 (-)
G105290 LOC108429417 other upstream 1423854 15370402 ~ 15373179 (-)
AMCG00011251 gfpt2,LOC106611946,LOC105024910,LOC108240504,LOC107375897 other upstream 1552986 15499534 ~ 15515675 (-)
AMCG00011259 pcbd2,LOC107386701,LOC105890513,LOC106941140,LOC103129816 other upstream 2016790 15963338 ~ 15973872 (-)

Expression


Co-expression Network