AMCG00011210 (bod1,LOC107581912,LOC107661728,LOC107713186,LOC107662284,LOC107587245,LOC108278584,LOC106603873)


Basic Information

Item Value
gene id AMCG00011210
gene name bod1,LOC107581912,LOC107661728,LOC107713186,LOC107662284,LOC107587245,LOC108278584,LOC106603873
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 13985665 ~ 13992845 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00011210
ATGGGTTCTTATAAAATGAGTGACTTGCCCGGCACTACAGAGACTCGGAGCTTTGTGGCGTTTCCCACACGGCTCCTGAAGCAGGGGAACACTGGGGGACACAGGGGGGACACAAAGATGATGGAGGAGAGGCAGGCCTGGGAGCCAGCTAGTGCCGTCGGCCAGCCAGCTCCAGCCTATCAGAACCTCAGGCAGAAAGTTGACAACTTCGTGTCCACTCACCTGAGCAGTCAGGAGTGGAACCCGGGCATCAACAAGAACCAGAGGCGATTGATCAGTAATACAGTGCGTGTCTGTGTTCGGAGCAGGTCAGGCATGCTGGAGGCTGGCGTGGATAGAATCATTACTCAGGTGGTGGATCCCAAACTGAACCACATCTTCAGGCCACACATAGAGAACGCCATTCATGATTTTCTGGCTGcggagaagaaggaggagggggTGCCAAACGCGCATCAAGAGCCAGAGCTACTGGAAGTGCCCACTGCCACACCGAAAACACCATGA
>TU131374
GCAGATGTATGTATTGATGTTGTTTATGTCCCTGTCCGTCAGCCAGCCTATCAGAACCTCAGGCAGAAAGTTGACAACTTCGTGTCCACTCACCTGAGCAGTCAGGAGTGGAACCCGGGCATCAACAAGAACCAGGTGCGCACCGGCCTGCGGCAGAGTGTCGTGCAGTCAGGCATGCTGGAGGCTGGCGTGGATAGAATCATTACTCAGGTGGTGGATCCCAAACTGAACCACATCTTCAGGCCACACATAGAGAACGCCATTCATGATTTTCTGGCTGcggagaagaaggaggagggggTGCCAAACGCGCATCAAGAGCCAGAGCTACTGGAAGTGCCCACTGCCACACCGAAAACACCATGAGaaacaaagaaaacattctgGATTAGCCCCCACAGtggcttttatttaattgtgcgCCCCAGTGTGGTTGTCTGAGCAGCCACTGCTTTGCAATGGCAGTGCAGCCTCAGGTGAACAGAGTGTTGTGGGATGATCCTGGCAGTGGCTGACCCGTGAGAGAGACCTTTGGATTGATGGCTGTGTTTGCACTGCAGCAGAAGAGGGCCCTGGACTGCGGCTCCTTTATCCCCCAGCTGAGAGCGTGCATTGTGCACTGATTCATACtcactgttttaattgtattgtaaccAAGCACTTACTGTAAATGCTGTTGAAGAGCTGCTTGAAACTTTCCCTTTGTAGTTCCTGGCTTTTGCATCAAAGCCTTTTACATTTCAGCATTCTTAAGacataaaaaaatcaacattctTGCACATAGAAGCCAAGAAACATAAGCAGTAGCTTTAATATTCTTAAGAGCTGGCAGTTGATGTTTGTTTGCAGTTGTGCATTATGCAAGAAGTTGTtttgaagaaatgttttttcaataaaaatgtttga

Function

symbol description
bod1 Predicted to enable protein phosphatase 2A binding activity and protein phosphatase inhibitor activity. Predicted to be involved in negative regulation of phosphoprotein phosphatase activity. Predicted to act upstream of or within cell division. Predicted to be located in chromosome; cytoplasm; and cytoskeleton. Predicted to be part of outer kinetochore. Predicted to be active in centrosome; spindle microtubule; and spindle pole. Orthologous to human BOD1 (biorientation of chromosomes in cell division 1).

NR:

description
PREDICTED: biorientation of chromosomes in cell division protein 1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00011210 False 507 mRNA 0.55 4 13985665 13991927
TU131374 True 906 lncRNA 0.47 3 13990955 13992845

Neighbor

gene id symbol gene type direction distance location
AMCG00011206 sec20,bnip1b,LOC105011259,LOC106603874,LOC106567448,LOC107727279,LOC108441621,LOC107587246 coding upstream 71479 13909732 ~ 13914186 (+)
AMCG00011205 crebrf,LOC106603875 coding upstream 85627 13891754 ~ 13900038 (+)
AMCG00011201 rpl26l1,rl26,LOC103040128,LOC100708525,LOC105024418,LOC107697626 coding upstream 118320 13864615 ~ 13867345 (+)
AMCG00011202 pcyox1l,LOC107581983,LOC103475662 coding upstream 130821 13851441 ~ 13854844 (+)
AMCG00011197 tcerg1,LOC102783943 coding upstream 243658 13722539 ~ 13742007 (+)
AMCG00011212 NA coding downstream 79523 14072368 ~ 14076417 (+)
AMCG00011213 LOC106567451,LOC106603869,LOC107661726,LOC108441632,LOC107713183,LOC107662844,LOC107587249 coding downstream 102310 14095155 ~ 14096053 (+)
AMCG00011214 NA coding downstream 203690 14196535 ~ 14196906 (+)
AMCG00011217 NA coding downstream 294911 14287756 ~ 14305622 (+)
AMCG00011215 sfxn1 coding downstream 373595 14366440 ~ 14379806 (+)
G104980 NA non-coding upstream 126683 13858651 ~ 13858982 (+)
G104979 NA non-coding upstream 127473 13857831 ~ 13858192 (+)
G104923 NA non-coding upstream 306285 13665947 ~ 13679380 (+)
G104910 NA non-coding upstream 430609 13553401 ~ 13555056 (+)
G104883 NA non-coding upstream 756249 13186948 ~ 13229416 (+)
G105046 NA non-coding downstream 69855 14062700 ~ 14063157 (+)
G105051 NA non-coding downstream 77555 14070400 ~ 14070969 (+)
G105078 LOC103376870 non-coding downstream 226105 14218950 ~ 14262016 (+)
G105113 NA non-coding downstream 463257 14456102 ~ 14459018 (+)
G105143 NA non-coding downstream 671775 14664620 ~ 14665153 (+)
AMCG00011204 NA other upstream 107383 13868337 ~ 13878282 (+)
G104815 slc23a1,pwwp2a,LOC106603911,LOC102781148 other upstream 1042583 12942380 ~ 12943082 (+)
AMCG00011163 reep2,LOC107557670,LOC107588406 other upstream 1306236 12670376 ~ 12679429 (+)
G104719 NA other upstream 1366610 12610129 ~ 12619055 (+)
G104694 NA other upstream 1458634 12525360 ~ 12527031 (+)
AMCG00011209 cpeb4,LOC106603870 other downstream 20276 14013121 ~ 14061027 (+)
G105139 LOC100846954 other downstream 626845 14619690 ~ 14620534 (+)
AMCG00011241 LOC102221627,LOC107740141,LOC107680337,LOC107593202 other downstream 1327935 15320780 ~ 15322658 (+)
AMCG00011250 NA other downstream 1479414 15472259 ~ 15487372 (+)
AMCG00011253 NA other downstream 1857801 15850646 ~ 15852389 (+)

Expression


Co-expression Network