XLOC_006067


Basic Information

Item Value
gene id XLOC_006067
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007124.7
NCBI id CM002897.2
chromosome length 52186027
location 30676825 ~ 30677643 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00013626
AAGGAGGTGAGCTGCCTCTAAACCAGATCAAACCAAACTCTGACACAACCTCTGCACAACAATCACTGCAAGCTTGTCCTACAGGTAAATTAACTTACTGAATGACTTCTTTTTTAATCTAAAATGCCTTGATTCtctaatacatttatgatcatttATAAGTTATGATAAGTTAATAAGTATTAGATGATGACTAAATGTTGCTCATCTTTCTGCAGGATGCAACCCAGAAGATTACTCTTGTCTGTGGCTCCTCTACCGACAATAACAGAGTCGCATGAGGATGTCTCACAGTCACTAGAGGAATATATAAACTCTTATAAAGAACTGGCACAGCCTGCTTGTGGCCCTTTGAGGATATCCAGAAGGCGTAAATCGGCAGGAAAGCATGCGGGTTCAAGCACAATGCCACGCAGTGCTTCTCGGGCTCTGCAGCCCCGCCGTGCTTCCCTTGGTCTGGATGAAGCCACTCTAAGGTTCAGCAGTCAGGTACACTGTGGCATTAAAGACCCCCTGGACTGGTTATTTGCACAGACGCAGTTACAGTCACACACAGAGGATCTGCACAGGACTGACAGTGCTGCTTTGTGGTTACTCTAATAAGCCAAAACACATTGACTTGAGAACGGGAGGACAACACTGGATGAGTGATGAATGAAATCAGTGGAAGATCACATAAACCGGACTTCTTAATTTATTGCCAGAACAGACTTTTTGTACAATGGTGCTAATGTTTACACCCTGTCAAAGTTGCTATTTTATTACTGCTTTATTACtgctttattgttgttttttaataaattgaacaATTTATCTTTA

Function

GO:

id name namespace
GO:0006883 cellular sodium ion homeostasis biological_process
GO:0001501 skeletal system development biological_process
GO:0043062 extracellular structure organization biological_process
GO:0030198 extracellular matrix organization biological_process
GO:0030133 transport vesicle cellular_component
GO:0044421 obsolete extracellular region part cellular_component
GO:0031012 extracellular matrix cellular_component
GO:0062023 collagen-containing extracellular matrix cellular_component
GO:0005576 extracellular region cellular_component
GO:0005581 collagen trimer cellular_component
GO:0099503 secretory vesicle cellular_component
GO:0005615 extracellular space cellular_component
GO:0070382 exocytic vesicle cellular_component
GO:0008021 synaptic vesicle cellular_component
GO:0019829 ATPase-coupled cation transmembrane transporter activity molecular_function
GO:0022853 active ion transmembrane transporter activity molecular_function
GO:0044769 ATPase activity, coupled to transmembrane movement of ions, rotational mechanism molecular_function
GO:0005198 structural molecule activity molecular_function
GO:0005201 extracellular matrix structural constituent molecular_function
GO:0015078 proton transmembrane transporter activity molecular_function
GO:0042625 ATPase-coupled ion transmembrane transporter activity molecular_function
GO:0042626 ATPase-coupled transmembrane transporter activity molecular_function
GO:0015399 primary active transmembrane transporter activity molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00013626 True 819 lncRNA 0.41 1 30676825 30677643

Neighbor

gene id symbol gene type direction distance location
XLOC_006066 ppifa coding upstream 101026 30572172 ~ 30575799 (+)
XLOC_006064 zmiz1a coding upstream 105966 30421472 ~ 30570859 (+)
XLOC_006065 AL844152.1 coding upstream 165102 30511607 ~ 30511723 (+)
XLOC_006063 AL929330.1 coding upstream 424968 30251741 ~ 30251857 (+)
XLOC_006062 qrfpra coding upstream 441605 30215765 ~ 30235220 (+)
XLOC_006068 CR762483.1 coding downstream 15026 30692669 ~ 30695994 (+)
XLOC_006069 cxcl18a.1 coding downstream 18643 30696286 ~ 30699369 (+)
XLOC_006070 cxcl12a coding downstream 126724 30804367 ~ 30819715 (+)
XLOC_006071 CR762493.1 coding downstream 159013 30836656 ~ 30836776 (+)
XLOC_006072 ercc6 coding downstream 196510 30874153 ~ 30910016 (+)
XLOC_006056 NA non-coding upstream 785005 29889189 ~ 29891820 (+)
XLOC_006054 CT025909.2 non-coding upstream 921398 29755293 ~ 29755427 (+)
XLOC_006053 CT025909.1 non-coding upstream 1085710 29590994 ~ 29591115 (+)
XLOC_006074 NA non-coding downstream 242911 30920554 ~ 30928661 (+)
XLOC_006101 NA non-coding downstream 1128877 31806520 ~ 31850508 (+)
XLOC_006102 NA non-coding downstream 1277577 31955220 ~ 31978484 (+)
XLOC_006103 NA non-coding downstream 1427622 32105265 ~ 32108472 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) G73718 NA non-coding CI01000012 null 9082222 ~ 9083476 (+)
bowfin (Amia calva) G67322 NA non-coding CM030127.1 CM030127.1 41507607 ~ 41508101 (+)
mexican tetra (Astyanax mexicanus) G62361 NA non-coding NC_035903.1 CM008306.1 6354803 ~ 6355105 (-)