AMCG00011227 (gabrg2,LOC107603256,LOC107661671)


Basic Information

Item Value
gene id AMCG00011227
gene name gabrg2,LOC107603256,LOC107661671
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 15015795 ~ 15023060 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00011227
tCTCTACAAAAAgaagatgatgaagatgaagatttAGTGTCCAACAAAACGTGGGTTTTGACTCCAAAAGTGTACGAGAGTGACgtgacacacattttaaacagcttGTTAGATGGATATGACAACAAACTGCGACCAGATATAGGAGtcaAACCAACCATAATCCACACTGACATGTTTGTAAACAGCATTGGTCCAGTAAATGCCATTAATATGGAATACACTATTGATATATTCTTTGCTCAGACTTGGTATGACAGACGGTTGAAATTCAACAGCACAATGAAAGTTCTGCGGTTGAACAGTAACATGGTCGGCAAGATCTGGATACCGGACACTTTTTTCCGGAACTCAAAAAAAGCCGATGCTCACTGGATAACAACACCCAACCGCATGCTGCGGATCTGGAACGATGGGAGGATACTGTATACGCTCAGGTTGACAATTGATGCTGAGTGCCAGCTTAAACTGAACAACTTTCCCATGGATGAGCATTCCTGTCCCCTGGAGTTTTCAAGCTATGGATATCCCAGAGAGGAAATCGTCTACAAGTGGAAGAAGAGCTCAGTTGAGGTTGGAGACACGCGCTCATGGAGGCTGTACCAGTTCTCCTTCGTGGGGCTGAGGAACGACACACAGATTGTGAAGACAGTG

Function

symbol description
gabrg2 Contributes to GABA-gated chloride ion channel activity. Acts upstream of or within protein heterotrimerization. Predicted to be located in postsynaptic membrane. Predicted to be integral component of membrane. Predicted to be part of GABA-A receptor complex. Predicted to be active in dendrite membrane and postsynapse. Predicted to be integral component of plasma membrane. Is expressed in central nervous system and eye. Used to study epilepsy. Human ortholog(s) of this gene implicated in childhood absence epilepsy; developmental and epileptic encephalopathy 74; and familial febrile seizures 8. Orthologous to human GABRG2 (gamma-aminobutyric acid type A receptor subunit gamma2).

NR:

description
LOC553402 protein, partial

GO:

id name namespace
GO:0007214 gamma-aminobutyric acid signaling pathway biological_process
GO:0006821 chloride transport biological_process
GO:0045202 synapse cellular_component
GO:0005886 plasma membrane cellular_component
GO:0030054 cell junction cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0004890 GABA-A receptor activity molecular_function
GO:0005230 extracellular ligand-gated ion channel activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00011227 True 654 mRNA 0.44 5 15015795 15023060

Neighbor

gene id symbol gene type direction distance location
AMCG00011225 gabra1,LOC106567505 coding upstream 52356 14941761 ~ 14963439 (+)
AMCG00011226 NA coding upstream 109189 14896196 ~ 14906606 (+)
AMCG00011224 LOC108435599,LOC101068624,LOC105904085 coding upstream 407212 14598190 ~ 14608583 (+)
AMCG00011221 NA coding upstream 476936 14502980 ~ 14538859 (+)
AMCG00011218 dpyl3,dpysl3,LOC106567513,LOC105900346 coding upstream 566118 14427479 ~ 14449677 (+)
AMCG00011228 gabrg2 coding downstream 10879 15033939 ~ 15041745 (+)
AMCG00011234 nudcd2 coding downstream 208387 15231447 ~ 15233722 (+)
AMCG00011235 NA coding downstream 219179 15242239 ~ 15249288 (+)
AMCG00011236 NA coding downstream 250839 15273899 ~ 15279561 (+)
AMCG00011240 NA coding downstream 291822 15314882 ~ 15317703 (+)
G105186 NA non-coding upstream 86855 14928643 ~ 14928940 (+)
G105145 atp10d,atp10b non-coding upstream 344246 14671298 ~ 14671549 (+)
G105144 NA non-coding upstream 344867 14670719 ~ 14670928 (+)
G105143 NA non-coding upstream 350642 14664620 ~ 14665153 (+)
G105113 NA non-coding upstream 556777 14456102 ~ 14459018 (+)
G105226 NA non-coding downstream 226678 15249738 ~ 15256622 (+)
G105238 NA non-coding downstream 257395 15280455 ~ 15283748 (+)
G105365 NA non-coding downstream 798248 15821308 ~ 15839105 (+)
G105370 NA non-coding downstream 836698 15859758 ~ 15861690 (+)
G105390 ddx46 non-coding downstream 973317 15996377 ~ 15997732 (+)
G105139 LOC100846954 other upstream 395261 14619690 ~ 14620534 (+)
AMCG00011209 cpeb4,LOC106603870 other upstream 954768 14013121 ~ 14061027 (+)
AMCG00011210 bod1,LOC107581912,LOC107661728,LOC107713186,LOC107662284,LOC107587245,LOC108278584,LOC106603873 other upstream 1022950 13985665 ~ 13992845 (+)
AMCG00011204 NA other upstream 1137513 13868337 ~ 13878282 (+)
G104815 slc23a1,pwwp2a,LOC106603911,LOC102781148 other upstream 2072713 12942380 ~ 12943082 (+)
AMCG00011241 LOC102221627,LOC107740141,LOC107680337,LOC107593202 other downstream 297720 15320780 ~ 15322658 (+)
AMCG00011250 NA other downstream 449199 15472259 ~ 15487372 (+)
AMCG00011253 NA other downstream 827586 15850646 ~ 15852389 (+)
AMCG00011252 NA other downstream 830704 15853764 ~ 15855784 (+)
AMCG00011255 LOC106603967,LOC105011194,LOC108410970 other downstream 839972 15863032 ~ 15873489 (+)

Expression


Co-expression Network