AMCG00011228 (gabrg2)


Basic Information

Item Value
gene id AMCG00011228
gene name gabrg2
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 15033939 ~ 15041745 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00011228
GAGATTATGTTGTGTTGACAGTCTTCTTTGAGCTAAGCAGGAGGATGGGGTACTTCACCATTCAGACGTACATTCCCTGCACTCTAATTGTTGTGCTGTCCTGGGTATCTTTCTGGATTAATAAGGACGCAGTACCAGCCAGAACATCCttagGCATCACAACTGTCCTGACCATGACCACGCTGAGTACTATTGCACGCAAATCCCTACCCAAAGTCTCCTACGTGACTGCAATGGATTTGTTCGTGTCTGTCTGCTTCATTTTCGTATTTGCTGCTCTGATTGAATATGGCACACTGCACTACTTTGTCAGCAACAGGAAACCAAGCAAAGACaaggacaagaagaagaaaaatcccACACCCACTGTGGACATTCGCCCTCGTTCTGCGACTGCCATTCAGATGAACAATGCCACACACCTCCAGGAGAGGGACGAAGAGTATGGGTATGAGTGCCTGGACGGCAAGGACTGCACCAGCTTcttctgctgttttgaagacTGTCGGTCAGGGGCATGGCGGCACGGCCGATTGCACATCCGCGTCTCTAAAATAGACTCCTACGCTCGCATCTTCTTCCCCACcgcttttggtttgtttaaccTGGTGTACTGGGTCTCATATCTCTATCTT

Function

symbol description
gabrg2 Contributes to GABA-gated chloride ion channel activity. Acts upstream of or within protein heterotrimerization. Predicted to be located in postsynaptic membrane. Predicted to be integral component of membrane. Predicted to be part of GABA-A receptor complex. Predicted to be active in dendrite membrane and postsynapse. Predicted to be integral component of plasma membrane. Is expressed in central nervous system and eye. Used to study epilepsy. Human ortholog(s) of this gene implicated in childhood absence epilepsy; developmental and epileptic encephalopathy 74; and familial febrile seizures 8. Orthologous to human GABRG2 (gamma-aminobutyric acid type A receptor subunit gamma2).

NR:

description
PREDICTED: gamma-aminobutyric acid receptor subunit gamma-2 isoform X4

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00011228 True 635 mRNA 0.49 3 15033939 15041745

Neighbor

gene id symbol gene type direction distance location
AMCG00011227 gabrg2,LOC107603256,LOC107661671 coding upstream 10879 15015795 ~ 15023060 (+)
AMCG00011225 gabra1,LOC106567505 coding upstream 70500 14941761 ~ 14963439 (+)
AMCG00011226 NA coding upstream 127333 14896196 ~ 14906606 (+)
AMCG00011224 LOC108435599,LOC101068624,LOC105904085 coding upstream 425356 14598190 ~ 14608583 (+)
AMCG00011221 NA coding upstream 495080 14502980 ~ 14538859 (+)
AMCG00011234 nudcd2 coding downstream 189702 15231447 ~ 15233722 (+)
AMCG00011235 NA coding downstream 200494 15242239 ~ 15249288 (+)
AMCG00011236 NA coding downstream 232154 15273899 ~ 15279561 (+)
AMCG00011240 NA coding downstream 273137 15314882 ~ 15317703 (+)
AMCG00011243 LOC108429417,LOC100380717,LOC108430974 coding downstream 323402 15365147 ~ 15374868 (+)
G105186 NA non-coding upstream 104999 14928643 ~ 14928940 (+)
G105145 atp10d,atp10b non-coding upstream 362390 14671298 ~ 14671549 (+)
G105144 NA non-coding upstream 363011 14670719 ~ 14670928 (+)
G105143 NA non-coding upstream 368786 14664620 ~ 14665153 (+)
G105113 NA non-coding upstream 574921 14456102 ~ 14459018 (+)
G105226 NA non-coding downstream 207993 15249738 ~ 15256622 (+)
G105238 NA non-coding downstream 238710 15280455 ~ 15283748 (+)
G105365 NA non-coding downstream 779563 15821308 ~ 15839105 (+)
G105370 NA non-coding downstream 818013 15859758 ~ 15861690 (+)
G105390 ddx46 non-coding downstream 954632 15996377 ~ 15997732 (+)
G105139 LOC100846954 other upstream 413405 14619690 ~ 14620534 (+)
AMCG00011209 cpeb4,LOC106603870 other upstream 972912 14013121 ~ 14061027 (+)
AMCG00011210 bod1,LOC107581912,LOC107661728,LOC107713186,LOC107662284,LOC107587245,LOC108278584,LOC106603873 other upstream 1041094 13985665 ~ 13992845 (+)
AMCG00011204 NA other upstream 1155657 13868337 ~ 13878282 (+)
G104815 slc23a1,pwwp2a,LOC106603911,LOC102781148 other upstream 2090857 12942380 ~ 12943082 (+)
AMCG00011241 LOC102221627,LOC107740141,LOC107680337,LOC107593202 other downstream 279035 15320780 ~ 15322658 (+)
AMCG00011250 NA other downstream 430514 15472259 ~ 15487372 (+)
AMCG00011253 NA other downstream 808901 15850646 ~ 15852389 (+)
AMCG00011252 NA other downstream 812019 15853764 ~ 15855784 (+)
AMCG00011255 LOC106603967,LOC105011194,LOC108410970 other downstream 821287 15863032 ~ 15873489 (+)

Expression


Co-expression Network