AMCG00011233 (gabrb2l,LOC106567507,LOC105011225,LOC107661674,LOC107578857)


Basic Information

Item Value
gene id AMCG00011233
gene name gabrb2l,LOC106567507,LOC105011225,LOC107661674,LOC107578857
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 14884434 ~ 14890305 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00011233
ATGcgccccctgccccctgccccgCTGCCAGCCCCGGTGGGCACCCTGGCAGCGGCAACACATGCATCGCCATCGAGTCAATGGACACCCATACCTGCGCATGGCTGCGAGTGTGCTGCTGCCTCGACACTATTCGCGGGTTGCAGATCAATTCGTTGCTTTGATGATGATTGGAAATTGCTCTGCCACCACCAGCATCAGCAGCCGCTGCTCCTTGATGTTGTGGTAGAGTGTGCGCATGCGCCCCACATTGGAATTACTGCACTGGCCAGAATAAGTTGGATCTCGTCTGTCTTCACTGAAATCCAAAATCATATCAAAACTATGGCGATGTTGAGAATCAGGAAAAGGAGCTACTTTGGGGTCTGGACCTTTCCTCTAATAGTGGCAGTGGTCTGTGCGCAGAGTGTCAATGACCCTAGCAATATGTCACTGGTAAAAGAAACTGTGGATAGACTGTTGAAAGGATATGACATTCGCTTGAGGCCAGATTTTGgagGTCCCCCGGTGGCAGTAGGCATGAATATAGACATTGCCAGCATAGACATGGTATCTGAAGTCAATATGCACAAGATTAAAGCCAGTGGAGTAAGTTACTCCATTGAAAATCCCTTTCCCTACCTCTCCAGCAAGTCTCTACAGAAGGGCCAGCAGATGCTGCATTGCCAAGAAGACTCATTAACGACCCTGATGAGGGAGAAACGAGAGGAGTTCCTTTAA

Function

NR:

description
PREDICTED: gamma-aminobutyric acid receptor subunit beta-2 isoform X2

GO:

id name namespace
GO:0006811 ion transport biological_process
GO:0045202 synapse cellular_component
GO:0005886 plasma membrane cellular_component
GO:0030054 cell junction cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0004890 GABA-A receptor activity molecular_function
GO:0005230 extracellular ligand-gated ion channel activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00011233 True 720 mRNA 0.50 5 14884434 14890305

Neighbor

gene id symbol gene type direction distance location
AMCG00011232 LOC103038806,LOC108413784,LOC107661674,LOC105011225,LOC106567507 coding downstream 50792 14823524 ~ 14833642 (-)
AMCG00011229 NA coding downstream 183005 14688179 ~ 14701429 (-)
AMCG00011231 NA coding downstream 208010 14649378 ~ 14676424 (-)
AMCG00011230 NA coding downstream 308406 14546071 ~ 14576028 (-)
AMCG00011223 stk32a,LOC104947536,LOC106965095 coding downstream 394853 14482370 ~ 14489581 (-)
AMCG00011239 NA coding upstream 190079 15080384 ~ 15130043 (-)
AMCG00011238 NA coding upstream 345320 15235625 ~ 15238725 (-)
AMCG00011237 sept8,LOC103475354 coding upstream 356887 15247192 ~ 15272628 (-)
AMCG00011245 NA coding upstream 392272 15282577 ~ 15295505 (-)
AMCG00011246 NA coding upstream 438031 15328336 ~ 15346964 (-)
G105112 NA non-coding downstream 434653 14447338 ~ 14449781 (-)
G105107 NA non-coding downstream 449767 14427419 ~ 14434667 (-)
G105105 NA non-coding downstream 464381 14419701 ~ 14420053 (-)
G105080 NA non-coding downstream 622524 14218955 ~ 14261910 (-)
G105077 LOC106567452,LOC106603868,LOC105011253 non-coding downstream 680898 14198827 ~ 14203536 (-)
G105187 NA non-coding upstream 38496 14928801 ~ 14929049 (-)
G105213 NA non-coding upstream 164111 15054416 ~ 15054817 (-)
G105221 NA non-coding upstream 228902 15119207 ~ 15119433 (-)
G105249 NA non-coding upstream 343398 15233703 ~ 15300851 (-)
G105261 NA non-coding upstream 408340 15298645 ~ 15322712 (-)
G105050 NA other downstream 815873 14067215 ~ 14068561 (-)
AMCG00011211 NA other downstream 887845 13993983 ~ 13996589 (-)
G104929 NA other downstream 1205172 13665795 ~ 13679262 (-)
G104909 NA other downstream 1517360 13365083 ~ 13367074 (-)
AMCG00011174 slc23a1,pwwp2a,LOC106603911,LOC102781148 other downstream 1928167 12942390 ~ 12956267 (-)
G105290 LOC108429417 other upstream 480097 15370402 ~ 15373179 (-)
AMCG00011251 gfpt2,LOC106611946,LOC105024910,LOC108240504,LOC107375897 other upstream 609229 15499534 ~ 15515675 (-)
AMCG00011259 pcbd2,LOC107386701,LOC105890513,LOC106941140,LOC103129816 other upstream 1073033 15963338 ~ 15973872 (-)
AMCG00011271 LOC107562913 other upstream 1153066 16043371 ~ 16098179 (-)
AMCG00011290 rbm27,LOC106567487 other upstream 2053627 16943932 ~ 16961069 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
rainbow trout (Oncorhynchus mykiss) G183656 NA non-coding NC_048566.1 CM023220.2 74333024 ~ 74334618 (-)