AMCG00011234 (nudcd2)


Basic Information

Item Value
gene id AMCG00011234
gene name nudcd2
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 15231447 ~ 15233722 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00011234
ACGTATCCTAAGTGCAGCAGAGACGGGGGAAGTAAACAGCTGGACAGCAAGTTGTGCATGGCCTTAAaccacacaaacatacatatatattcctCACAGAGCCGTGGGCTTCCCAGTGAGGCTTTACATTGGGTGCAGTGTGGTAAACGCACACAGGGTATCAATAGACCGTTGTTAAATCCCGGTGAATGATACAGGGACTGCTGTGACACAAGGTTAGAGCATGTCGGTGCATTTTGACGAAAGGAGCGGTATTATCCCCTGTAAAACACCCTGGGGGTCGTGGTACCAAACCATGGAGGAGGTTTTTATTGAAGTAAACGTGCCTCCGGGGACTTCTGCCAAGGAGATTAAATGTAACCTCGGCAGCAGACAAATAGACGTGTGTGTGAAAGGACGAGAAATGATTAAGGGAAAACTTTTTGGTTGTACTGTAGAAGATGAGGCAACCTGGACACTGGAGGACAGGAAACTGATCCAGATTATTCTGATGAAGAGCAACCGGGAGGCGGGGAACTGCTGGCTGTCTCTGTTAGAGGGGCAGTACTGCGCAGACCCCTGGGTGCAGGACCAGATGCAGAAGAAGCTGACCCTGGAGAGGTTTCAGAGGGAGAATCCTGGCTTTGACTTCAGTGGTGCAGAGATTTCTGGGAACTTTGCTGGTGGTGGACCAGACTTTTCAAatttaggaaaataaacagTTCTGCAGTTTCACTTCATAGGATTGCTACAATGACCACATTTTGGATGTGGAGGGAGATCTTAAAGCAGCAGAAGACTCTTCCAGAGAAATGTTTTACTTCAGGTGTGAGGTTATATCCTTGAgcaatacagaaaacagaagaaaaatgactggtttaccaaagtattgcAAGAACACCATTCATTCACTTTACCAACCAGCACGATGACATGCTTCACAGACTAAATAAAGACTACAATTTTTGGAGTTGGGGCTTTACCTTTTATTAGAGTTGAACAGCCACAAAACGATCTATAGGACTACTTACCTTTCGTGCTGATAGTTAAAACATCACTTCTGGTCCTCACagtaacatttattaaataatttggttGGTCATGGGTTAAGTTTTGGGTTTGAACTTACTGGTGtaatttatgaatatttacatCACTTACACCTTCATGGATGAAGCATAGATTCATTTCAAAAGTGTATGTAGCAAATTTGAATGATTCCAGACAAAATTACTGGCAACAACATGgagaaagtttaaaaaagttttgtCATTTCCCCATTGCCTTCTTGAGAGTAGTTTTAAATGATCAGATTGCATCCTATTCTTGACAGCATTGTGCCATTTTAATGAGCATTTAAACTTCAGGTTagttaattgttttcttgtttaaattgaaacagTGGTCTTCAAAAGGTAGGGTTACATTAGTCTTAGAATAATTCAAATCCGATTCAAAATGTCTTGAGACTTTAACCTTTGAATGTGATCCTTTATGGTATAAATAGGTGATTTATACATCTAAGAAAAAGTGGAAAATATTAACCTTAATTAGATCAATGTGAAACTAGTTTAAATCCATTTGAATCCAGATAAAAGGAAGTTCAATTAATACTGCTTAGACAAATTACAAAAGTGGTGAAAGATGTTTAACTGCTGGAATAAAC

Function

symbol description
nudcd2 Predicted to enable unfolded protein binding activity. Predicted to be involved in protein folding. Predicted to be active in cytoplasm. Orthologous to human NUDCD2 (NudC domain containing 2).

NR:

description
nudC domain-containing protein 2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00011234 True 1645 mRNA 0.40 4 15231447 15233722

Neighbor

gene id symbol gene type direction distance location
AMCG00011228 gabrg2 coding upstream 189702 15033939 ~ 15041745 (+)
AMCG00011227 gabrg2,LOC107603256,LOC107661671 coding upstream 208387 15015795 ~ 15023060 (+)
AMCG00011225 gabra1,LOC106567505 coding upstream 268008 14941761 ~ 14963439 (+)
AMCG00011226 NA coding upstream 324841 14896196 ~ 14906606 (+)
AMCG00011224 LOC108435599,LOC101068624,LOC105904085 coding upstream 622864 14598190 ~ 14608583 (+)
AMCG00011235 NA coding downstream 8517 15242239 ~ 15249288 (+)
AMCG00011236 NA coding downstream 40177 15273899 ~ 15279561 (+)
AMCG00011240 NA coding downstream 81160 15314882 ~ 15317703 (+)
AMCG00011243 LOC108429417,LOC100380717,LOC108430974 coding downstream 131425 15365147 ~ 15374868 (+)
AMCG00011242 NA coding downstream 143544 15377266 ~ 15381601 (+)
G105186 NA non-coding upstream 302507 14928643 ~ 14928940 (+)
G105145 atp10d,atp10b non-coding upstream 559898 14671298 ~ 14671549 (+)
G105144 NA non-coding upstream 560519 14670719 ~ 14670928 (+)
G105143 NA non-coding upstream 566294 14664620 ~ 14665153 (+)
G105113 NA non-coding upstream 772429 14456102 ~ 14459018 (+)
G105226 NA non-coding downstream 16016 15249738 ~ 15256622 (+)
G105238 NA non-coding downstream 46733 15280455 ~ 15283748 (+)
G105365 NA non-coding downstream 587586 15821308 ~ 15839105 (+)
G105370 NA non-coding downstream 626036 15859758 ~ 15861690 (+)
G105390 ddx46 non-coding downstream 762655 15996377 ~ 15997732 (+)
G105139 LOC100846954 other upstream 610913 14619690 ~ 14620534 (+)
AMCG00011209 cpeb4,LOC106603870 other upstream 1170420 14013121 ~ 14061027 (+)
AMCG00011210 bod1,LOC107581912,LOC107661728,LOC107713186,LOC107662284,LOC107587245,LOC108278584,LOC106603873 other upstream 1238602 13985665 ~ 13992845 (+)
AMCG00011204 NA other upstream 1353165 13868337 ~ 13878282 (+)
G104815 slc23a1,pwwp2a,LOC106603911,LOC102781148 other upstream 2288365 12942380 ~ 12943082 (+)
AMCG00011241 LOC102221627,LOC107740141,LOC107680337,LOC107593202 other downstream 87058 15320780 ~ 15322658 (+)
AMCG00011250 NA other downstream 238537 15472259 ~ 15487372 (+)
AMCG00011253 NA other downstream 616924 15850646 ~ 15852389 (+)
AMCG00011252 NA other downstream 620042 15853764 ~ 15855784 (+)
AMCG00011255 LOC106603967,LOC105011194,LOC108410970 other downstream 629310 15863032 ~ 15873489 (+)

Expression


Co-expression Network