AMCG00011236


Basic Information

Item Value
gene id AMCG00011236
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 15273899 ~ 15279561 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00011236
ATGGCTTTCTGTCTGACCCAGGAAGCAGTGTTGACTTTTCTCCTGGAAAGGGGGGGGAAAGCGAAGAACTCGGACCTGCTGAACCAGTTCAAGAGCCTCCTCAGCGGCAGCGACCCCGACGAGAAGAAGAAGAACCGAGATCTCTTCAAGAGGTTTGTGAACACCGTGGCGGTCGTGAAAGAGATCGAGGACGTGAAGTATATCGTGATCAAGAAACCGTATCAGCATTTGGTGAAAGAAGAAGACACGCCTGTCCCTGCAGTGGGGGGGAGGTCGGCAGGTAGCTCACGTACAGATCCAGGTGGGGCAGGTAAGACTTTGACTTGTGACTTTGACAACAACAATGTGGTGGCCACTCTCCCGAGCACCACAGCTGATTGTAGAAACAAGAATACAAGCCAGTCACTTATAGAACTGGCGCTACAAAGAAGTCGGGCTGTGTGTGTCAACGCTAATGCTATAGATGTTGGGGTGAGCTCACTTACAGACCCCCAAGACCAGGCTTCAAAGGTCAAGGGGCGTTCAGAAGAGGTCAGGCGTACTCCAGCTGACAAGGCGAGGTCAGTTTTCGCTCTGGTGGCGATGCCAGACTGCTCAAGTTCACAGCCCCATCTCCAGCCGGGGCATTTCAAATGGGATGGGGTCCCAAGCCCGGCGGGCGCACAGAAGCCAGTGCAGAAACCTTATATGCTGCCTTTAAGGGTACCCCCACCTCAGATCAGCGTCACAGCCGCCGAGGTGGAGACCGCCACAGAGGGGACCAAGAGAAGACAAACTCAGGAAGCTGCCCCTCAGCCCTCGCCCAATTTGAACAGGGGTTCCAAGACCCTCAAACCGGGCGACGAACTCAAGGGTTCCGGTGCAGTCCCGCTTGACTCAATGGAGCATGAGTGGCTGGTCAAGTCTGCGGCGGGCCACTGGAACCAAGTATACGGCCTCCTGCTGAAGGACACCACCCTGGCGGAGAAAAGGGACTTTATGTCAGGTTTCACGGCGCTCCACTGGGCGGCCAAAAGCGGCAACGGTGACATGGTGTGTAAAATCATAGAGATCTCCAAGGCAGGAGGCAATAAGGTGGACGTCAACATCAAGACTTATGGGGGTTATACGCCACTCCACATGGCTGCCATACACTGCCACGAATATGTTATGAAAGTGTTGGTGCAAGACTACGGGGCAAACCCCAGGATCAGGGACAACAGTGGAAGGAAGCCGTACCACTATTTACACAAAGGGGTGTCACTTGAAATAAGGGTGCTGTTAGGAGAGCCCCAGGGGACACTGCAGGAAGCTGTCCATCCAAGGAGAGAAGACGACACTTTTCAGGAGCTTCCCAGAGCCTTTAAGTCGCACACCTTGAGTAGACTATTCAATCCATACTCTGGATATAAAAAGAAGCAACAGGAGCTGGCGGTCTTCAGATTCGGTGCAGACACCCTCAATAAGGAACGCAAACCCTCTCCTGTTGCCTCGCTAGAGCCAGGCTGGTTGCAGACTGTTAAATACTACAGACTCCTCAGAGACGAG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00011236 True 1527 mRNA 0.54 3 15273899 15279561

Neighbor

gene id symbol gene type direction distance location
AMCG00011235 NA coding upstream 24611 15242239 ~ 15249288 (+)
AMCG00011234 nudcd2 coding upstream 40177 15231447 ~ 15233722 (+)
AMCG00011228 gabrg2 coding upstream 232154 15033939 ~ 15041745 (+)
AMCG00011227 gabrg2,LOC107603256,LOC107661671 coding upstream 250839 15015795 ~ 15023060 (+)
AMCG00011225 gabra1,LOC106567505 coding upstream 310460 14941761 ~ 14963439 (+)
AMCG00011240 NA coding downstream 35321 15314882 ~ 15317703 (+)
AMCG00011243 LOC108429417,LOC100380717,LOC108430974 coding downstream 85586 15365147 ~ 15374868 (+)
AMCG00011242 NA coding downstream 97705 15377266 ~ 15381601 (+)
AMCG00011247 ndfip1,LOC106567495 coding downstream 110042 15389603 ~ 15404222 (+)
AMCG00011249 cnot6 coding downstream 277287 15556848 ~ 15565856 (+)
G105226 NA non-coding upstream 17277 15249738 ~ 15256622 (+)
G105186 NA non-coding upstream 344959 14928643 ~ 14928940 (+)
G105145 atp10d,atp10b non-coding upstream 602350 14671298 ~ 14671549 (+)
G105144 NA non-coding upstream 602971 14670719 ~ 14670928 (+)
G105143 NA non-coding upstream 608746 14664620 ~ 14665153 (+)
G105238 NA non-coding downstream 894 15280455 ~ 15283748 (+)
G105365 NA non-coding downstream 541747 15821308 ~ 15839105 (+)
G105370 NA non-coding downstream 580197 15859758 ~ 15861690 (+)
G105390 ddx46 non-coding downstream 716816 15996377 ~ 15997732 (+)
G105434 NA non-coding downstream 776604 16056165 ~ 16056449 (+)
G105139 LOC100846954 other upstream 653365 14619690 ~ 14620534 (+)
AMCG00011209 cpeb4,LOC106603870 other upstream 1212872 14013121 ~ 14061027 (+)
AMCG00011210 bod1,LOC107581912,LOC107661728,LOC107713186,LOC107662284,LOC107587245,LOC108278584,LOC106603873 other upstream 1281054 13985665 ~ 13992845 (+)
AMCG00011204 NA other upstream 1395617 13868337 ~ 13878282 (+)
G104815 slc23a1,pwwp2a,LOC106603911,LOC102781148 other upstream 2330817 12942380 ~ 12943082 (+)
AMCG00011241 LOC102221627,LOC107740141,LOC107680337,LOC107593202 other downstream 41219 15320780 ~ 15322658 (+)
AMCG00011250 NA other downstream 192698 15472259 ~ 15487372 (+)
AMCG00011253 NA other downstream 571085 15850646 ~ 15852389 (+)
AMCG00011252 NA other downstream 574203 15853764 ~ 15855784 (+)
AMCG00011255 LOC106603967,LOC105011194,LOC108410970 other downstream 583471 15863032 ~ 15873489 (+)

Expression


Co-expression Network