AMCG00011240


Basic Information

Item Value
gene id AMCG00011240
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 15314882 ~ 15317703 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00011240
cGCACATTGGCGTGATTGCGCACACCTGGCGACTCTTAAGTGGCGCAAGGAGAGGGTGGCGCGTCCTCCAGTTTTGGCTGGAAATTCTCTGGGGCTTTGTATGCACTGTGCTAATTACAATGGGGATTGTCGTCAAAATAGGTTTAGCTTGGTATTGTTTCACTTGCCTTGCTTTACCTTGCGTGTGGAGTGGTTACCTGCACCCATCTCGGTCCCACTCCTTGGCGAATGGCCCAGGTGAGCCGCCGGCAGCTCCCGATGTACACGGCAGCATATTGTCCTCCTTGCTAAAAGCGTTGTCTGAAAAGGGCCACTGGGCAGAGCCGACTCCGAGGCTCAAACCCGATTCCAGATATGTGAGATACATGAAAAGGATCTATAGGATGTCTGCAACGCACGACAGGGAGCCCAAGGGCAGCAGAAGCCACCTGTACAACACCGTGAGGCTGTTCACTCCACGGGATGAGTGTCCTGAACAGAGTAGAGAAATTTTTACAGAAGGCCTCTCTTACAACTTAGACCGTGTCAGGGCTCAAGAGCAGCTGCTGAAGTCAGTCCTACTCTATTCGTTTGACAAACGACACGTCACTCCACTGGTGTCCACCTGCCACTTGCGTCTCAAGGAACAGGAGCACTCGGACCAGCAAGTGTGCTCCAGTGCCCAGCACTCGTTCAGCTTTCACGTCCAAATCGAGAGACGGAGTCGGAGGAAATGGGTGGAGGTGGACGTCACTTCTTTCCTTCAGCCTCTAATCAGATCTCATAAGAAGGACATACACATGGTTGTCAATTTGACCTGTGTGATGGAAGGTGCACATAACCAGGACAACCTGGATCAAAGGAAGCCCATTGAACTTTCCTTCAAGCCACCTTCCCTCCTTCTGTATCTCAACGACACCAGTGAACTGGCATACCAGAGACGGTCCACGTCTGCCAAACTCTCGGACACAGAGAAGCCAGGTCAAGGTGTAGAGAGCCCAGACTCTGGCACCCAGCTGCAGCGACAGGTGGAAAAAAGATCCTTGCGATTCAGAAGAAACCAGCCTAAACATGAACAGGTTCAGTCCACCCCATCCACTACCACAGCGAGTCTCCTTCAACACTATCAAAAGTTTGAGTTCCCCACAGACGAGTGCGAGCTTTTTGATTTCAGAGTGAGCTTTAGCCAGCTTAAGTTGGACCACTGGATAATTGCACCTTACAAATACAACCCCCGCTACTGCAAAGGGGTTTGCCCACGGGCTGTGGGTTATCGATATGGCTCTCCAGTTCACACCATGGTGCAGAACATAATTTATGAAAAGCTGGACTCTTCTGTCCCCAGACCATCGTGTGTGCCGTCCGACTACAACCCCCTGAGTGTTTTAACCATAGAAAATGATGGCTCCATTGCTTACAAAGAATATGAAGAGATGATCGCTACTAAGTGCACCTGCCGCTAAGCAGAGGGATGAAGGGGAGGAAGGACTGTGCTTGGCCTTTTTACCATTACACATCCACTCATGAACTGTAATTAATGTGAATTTCTGAAACCCATATTCTCTCGGATACATGGAAAACCACAGGATTGCTTACCGTAAGGTTACTGCATAAATATTTTGGAGAAATCGCAGGATGTGCTGTTATTTATAACTAGAGCAGGAGAATTTACTTAAcgcaatgttttttgtttgacaaaatatgatattttaGCCAAATGAGgtcaaatgtataaaattattgaaatgcagtttttttgtttgtttggttttttttcaaacatttaaacctTTTCCTCTATTTAACATAGATGGCATATGCCATTTAACAGAGaatattagaaatgttttgaaaagtaaaaaggGGCTAAtttcggtttgtttgttttcttttgatttatcATTATgaagcttttatttgttttgttttgtttttctatttactttttggtttattatgattgacaaatgttttaagtaaaataatgttctgGTCACTATGATGAGATTTTAGTCCTCTAACTCTTACCAAAGgtttttactgtgatttttttaCTGGGGATACAGATGGTTGTCTTATGGACAACTGTTTTCTATTCATAATGTCCAAAGTGAAAGTTGTCTTTTAATACGGACAACTCGATTTGTCAATCTGTACTTAATATTCTCAGCTATGAAATTACTGTAAATAGGATTGAAGTATATAATGGGGCAAATGCACatcaaaacatttctatttaatatatatatatatatatgtaaatgtataattatgatttatattgtCTGATTTTGGCTGATGGGGGGAACTATGATATTACtatatttggaaatatttagtaaaaagaaaaaaaaat

Function

GO: NA

KEGG:

id description
K22673 GDF9; growth differentiation factor 9

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00011240 True 2335 mRNA 0.43 2 15314882 15317703

Neighbor

gene id symbol gene type direction distance location
AMCG00011236 NA coding upstream 35321 15273899 ~ 15279561 (+)
AMCG00011235 NA coding upstream 65594 15242239 ~ 15249288 (+)
AMCG00011234 nudcd2 coding upstream 81160 15231447 ~ 15233722 (+)
AMCG00011228 gabrg2 coding upstream 273137 15033939 ~ 15041745 (+)
AMCG00011227 gabrg2,LOC107603256,LOC107661671 coding upstream 291822 15015795 ~ 15023060 (+)
AMCG00011243 LOC108429417,LOC100380717,LOC108430974 coding downstream 47444 15365147 ~ 15374868 (+)
AMCG00011242 NA coding downstream 59563 15377266 ~ 15381601 (+)
AMCG00011247 ndfip1,LOC106567495 coding downstream 71900 15389603 ~ 15404222 (+)
AMCG00011249 cnot6 coding downstream 239145 15556848 ~ 15565856 (+)
AMCG00011257 NA coding downstream 332034 15649737 ~ 15664041 (+)
G105238 NA non-coding upstream 31134 15280455 ~ 15283748 (+)
G105226 NA non-coding upstream 58260 15249738 ~ 15256622 (+)
G105186 NA non-coding upstream 385942 14928643 ~ 14928940 (+)
G105145 atp10d,atp10b non-coding upstream 643333 14671298 ~ 14671549 (+)
G105144 NA non-coding upstream 643954 14670719 ~ 14670928 (+)
G105365 NA non-coding downstream 503605 15821308 ~ 15839105 (+)
G105370 NA non-coding downstream 542055 15859758 ~ 15861690 (+)
G105390 ddx46 non-coding downstream 678674 15996377 ~ 15997732 (+)
G105434 NA non-coding downstream 738462 16056165 ~ 16056449 (+)
G105436 NA non-coding downstream 745211 16062914 ~ 16063749 (+)
G105139 LOC100846954 other upstream 694348 14619690 ~ 14620534 (+)
AMCG00011209 cpeb4,LOC106603870 other upstream 1253855 14013121 ~ 14061027 (+)
AMCG00011210 bod1,LOC107581912,LOC107661728,LOC107713186,LOC107662284,LOC107587245,LOC108278584,LOC106603873 other upstream 1322037 13985665 ~ 13992845 (+)
AMCG00011204 NA other upstream 1436600 13868337 ~ 13878282 (+)
G104815 slc23a1,pwwp2a,LOC106603911,LOC102781148 other upstream 2371800 12942380 ~ 12943082 (+)
AMCG00011241 LOC102221627,LOC107740141,LOC107680337,LOC107593202 other downstream 3077 15320780 ~ 15322658 (+)
AMCG00011250 NA other downstream 154556 15472259 ~ 15487372 (+)
AMCG00011253 NA other downstream 532943 15850646 ~ 15852389 (+)
AMCG00011252 NA other downstream 536061 15853764 ~ 15855784 (+)
AMCG00011255 LOC106603967,LOC105011194,LOC108410970 other downstream 545329 15863032 ~ 15873489 (+)

Expression


Co-expression Network