AMCG00011242


Basic Information

Item Value
gene id AMCG00011242
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 15377266 ~ 15381601 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00011242
ATGTCCTCGGAAGATCTGGAAGCCCAGGAGGATGAGCTGCTGGCCCTAGCGAGCATCTACAATGAAGACGAGTTTCTCAGGGCCGAGTCCGCACAGGGAGGGGAGATCCGCGTCTGTCCACAGCTGCCGCACAACTTCAGAATATTTGGGAAAGgGGAGGAACATATTGAATACGCAGTGTCTTTTCTACCTCCAGTTGTTTTGAACTTCGAACTTCCTTCAGATTACCCTTCAAACTCTTCTCCAGTCTTCACTGTGAGCTCCACATGGCTTTCAAGAGTCCAGCTGGGAGCTGTGTGCAAGCGCCTGGACGAACTGTGGCAGGAGAGTGTGGGCAGTGTGGTTCTCTTCTCCTGGATCCAGTTTCTCAAAGAGGACATCCTTAACTTCTTCAGCATAGAGTCCCCTCTGGAAATCGTGACGGCAGAAAAGGGCAGGAAGGAGCCGGAGAAAGAAGCAGCCCCAGAGAAGGAGCGAGAGGAGGACGcagaggagagcgagagagagggccTGGACCCGCGGGCCATTGTGGAGGTGGACCCCAGGACCAATgttctcctgcagctgctggatTTCGATGTTGAGCAGCAGCAGAAGGCCTTCGACAGCAAAGCTTACTCCTGCGGGATCTGCTTCTTGGAGAAGATGGGCTCTGAGTGCCTGTGCTTCAAAGAGTGCAGACATGTGTACTGCAAGGCCTGCTTGACGGACTACTTCCAGATCCAGATCAGAGACGGCAATGTCCAGTGCCTTAATTGCCCAGAGCCCGAGTGCAACTCTGTTGCTATGCCTTCCCAGGTCAAGAACCTGGTTGGAGAGGAGCTGTTTGCACGCTATGACCGGCTCCTTCTCCAGTCCAGCCTGGATCTCATGGCAGACATTGTGTACTGCCCCCGGAAGATGTGCGGCTCAGCGGTGATGGTGGAGCCGGACACCACCATGGGAATCTGCCCTACCTGCCAGTATGCCTTCTGCAGCCTCTGTAAACATGGCTATCATGGGCTGTCGCCTTGCAAAGCCACAGCACAAGAGCTGTGCAGCCTGCGAGATGAGTACCTGGAAGCCGGGGAGGTGGAGAAGCGCTTCCTCGAGCAGCGCTACGGGAAGAGGGTTATCCAGAAGGCGGTGGAGGAGTCGTTCAGCCAAGAGTGGCTGGAGCAGAACTCCAAGTGCTGCCCGCGGTGTAGCACTCACATCCAGAAGGACCATGGCTGCAACAAGATGACCTGCACCAGCTGCAAGCAGTACTTCTGTTGGCTGTGCTTGGCTCCATTGACTCGGGCCAACCCGTACGACCACTTCAACAACACTTCCTCACAGTGCTTCAGGCAGCTGTTCCAGGGTGTGGACATTCACGATGAGGAGAACCTGTGGAGCGATGAAGAGGACTGACAGAAGGACTGATGTGTGGCCCCTTCCTATATGCTGCTGTTCCCTGCACCTTATTTCTCAACTCAGAGCCAGAATAATACCTGTAAAGgttcacaacaacaacaacaaacctaCCATGAAGAGAATTAATGCATTCATGACATGGGAAGTCAAATAAAGAAGTTCCTATAACCATTTTTCCTGATGCCCAGATTGATTAAAAAGCTGCCCACTAGCACCTGGTTGGTACACTACAGCTGGTAGCTGGATCAGGGTTGaaggttttatttaatctggatGGCCTTATTTGGCTTCACATGAGttagggaggggaaaaaagcataactagtgttctgtgttttcagagctgattttttttttttccctggtgTACTTAATTGGCTCTGCTTTTTGGGCACCCTCCTGCCTTTAGCCATAGTGTAGGCCTTGGTTCATCTGACCCAACAAACCTCTGTAATAGTTGAAGGAGAAACATCTAAAGCAAATCACGTAActgacattttataaatgtgtggtaaatattacttttgtttttctagttcAGTAGGTTAGTTCTCCTTGGAGCTCTTTCAATGCTCACAAAATCTCTGCAGATTTTATTCAGGGTAGGAGTGAGAAAGAGGTTGAGAAGAAAAATGTGATTGTTTGTTATATATGCTTTCAAATAATGGAAAATGCACTTAATACACGGTCGACTATCTTAGAGGTAGACTACAATGATGGAAATTACAACTGACAGAAAGGCACCCCTGTTGTATACAGTGAGGGCATGGCGGCCTGTGGCTTCCATTCCCTAACATTGCAGTTATTTGCTGCACTTAATCCTTGCTCAAATGATCTTCAGCATCACGATCAGTCACGTAATTAAGGGGTCATTTGAGATAAGTACAGGTTGGACAGATGTTGCAGAATGGAATGGAAGCTTGCTGCAAGAAACTGTAATATTAGTTAATAAAAGCTTTTGGTTCAGatgttcagatgtttttttttttttaatactgcttATTATGTCTTCTGTATTCAGACTGTGAGAAGACCTgtatattgttgtattgttttcatagcACATATTTACCTATTGATTTGGATGACAGCTGTATTCCTACATACTTGCATTTTACAGCATTATATAGCAACTACTATATTCACTCACAGGGAACTGTAAAACATTACATGGTACAAAAAGTCAAACATTCAGTAAGTGGTCTGaatagtatatgtatatatatatatatatatatatata

Function

GO:

id name namespace
GO:0046872 metal ion binding molecular_function

KEGG:

id description
K11971 RNF14, ARA54; E3 ubiquitin-protein ligase RNF14

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00011242 True 2638 mRNA 0.47 7 15377266 15381601

Neighbor

gene id symbol gene type direction distance location
AMCG00011243 LOC108429417,LOC100380717,LOC108430974 coding upstream 2398 15365147 ~ 15374868 (+)
AMCG00011240 NA coding upstream 59563 15314882 ~ 15317703 (+)
AMCG00011236 NA coding upstream 97705 15273899 ~ 15279561 (+)
AMCG00011235 NA coding upstream 127978 15242239 ~ 15249288 (+)
AMCG00011234 nudcd2 coding upstream 143544 15231447 ~ 15233722 (+)
AMCG00011247 ndfip1,LOC106567495 coding downstream 8002 15389603 ~ 15404222 (+)
AMCG00011249 cnot6 coding downstream 175247 15556848 ~ 15565856 (+)
AMCG00011257 NA coding downstream 268136 15649737 ~ 15664041 (+)
AMCG00011254 NA coding downstream 373685 15755286 ~ 15799493 (+)
AMCG00011256 NA coding downstream 444012 15825613 ~ 15826569 (+)
G105238 NA non-coding upstream 93518 15280455 ~ 15283748 (+)
G105226 NA non-coding upstream 120644 15249738 ~ 15256622 (+)
G105186 NA non-coding upstream 448326 14928643 ~ 14928940 (+)
G105145 atp10d,atp10b non-coding upstream 705717 14671298 ~ 14671549 (+)
G105144 NA non-coding upstream 706338 14670719 ~ 14670928 (+)
G105365 NA non-coding downstream 439707 15821308 ~ 15839105 (+)
G105370 NA non-coding downstream 478157 15859758 ~ 15861690 (+)
G105390 ddx46 non-coding downstream 614776 15996377 ~ 15997732 (+)
G105434 NA non-coding downstream 674564 16056165 ~ 16056449 (+)
G105436 NA non-coding downstream 681313 16062914 ~ 16063749 (+)
AMCG00011241 LOC102221627,LOC107740141,LOC107680337,LOC107593202 other upstream 54608 15320780 ~ 15322658 (+)
G105139 LOC100846954 other upstream 756732 14619690 ~ 14620534 (+)
AMCG00011209 cpeb4,LOC106603870 other upstream 1316239 14013121 ~ 14061027 (+)
AMCG00011210 bod1,LOC107581912,LOC107661728,LOC107713186,LOC107662284,LOC107587245,LOC108278584,LOC106603873 other upstream 1384421 13985665 ~ 13992845 (+)
AMCG00011204 NA other upstream 1498984 13868337 ~ 13878282 (+)
AMCG00011250 NA other downstream 90658 15472259 ~ 15487372 (+)
AMCG00011253 NA other downstream 469045 15850646 ~ 15852389 (+)
AMCG00011252 NA other downstream 472163 15853764 ~ 15855784 (+)
AMCG00011255 LOC106603967,LOC105011194,LOC108410970 other downstream 481431 15863032 ~ 15873489 (+)
G105373 cssa04h5orf24,pcbd2,LOC105890513,LOC100699409 other downstream 581739 15963340 ~ 15984079 (+)

Expression


Co-expression Network