AMCG00011243 (LOC108429417,LOC100380717,LOC108430974)


Basic Information

Item Value
gene id AMCG00011243
gene name LOC108429417,LOC100380717,LOC108430974
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 15365147 ~ 15374868 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00011243
ttttttttttctttttaatcaatCCCCATCTCTCACTGTTCTTACTTTTTAGACTTGTTTTGGGATCCTTAAAAGCCGACTTTTATTTTAGGATAAATTCTACACACTCATTCAGTACGGTCTACCCTCAGCAGAAAGATGTCAGTGGTCGGGTTTGATGTCGGATTTCAGAGCTGCTATGTTGCGGTGGCGAGAGCCGGCGGGATAGAGACGGTGGCCAACGAGTACAGCGACCGCTCCACGCCGGCATGTGTATCCTTTGGACCACGGAATCGTTCAATTGGAGCCGCTGCTAAAAGCCAGATTGTCACAAATCCTAAGAACACCGTCCACGGGTTTAAGCGATTCCATGGCAGGGCGTATTCTGACCCTTTCATTCAGTCTACAAAACCCACCCTTCCCTTCGAACTGGCCCAAATGCCAACAGGAACAACTGGCATCAAGCTGATGTAcatggaggaggagaaggtcTTCAGTATTGAACAAATTACTGGCATGTTGTTGACCAAGCTAAAGGAGACCGCTGAAAGTGCACTGAAGAAACCTGTGGCGGATTGTGTCATTTCTGTTCCCTGCTTCTATACAGATGCTGAGAGGAGGTCTGTAGTAGATGCAGCACAGATTGCAGGTCTCAACTGTCTACGACTCATGAATGAAACGACCGCAGTGGCACTTGCTTATGGAATTTACAAACAAGACCTTCCGGCCCCTGAGGAAAAACCCAGGACAGTAGTGTTTGTGGATCTTGGTCATTCTTCATACCAGGTTTCAGTCTGTGCTTTTAACAAGGGAAAACTTAAGgttcTTGCTACAGCTTTTGATATAGCCTTGGGTGGCAAAGATTTTGACGAGATGTTAGTGAATCATTTTTGTGAAGAGTTTGGTAAGAAGTACAAGCTGGATGTGAAGTCCAAGACCCGAGCCCTTCTCAGGCTGTACCAGGAGTGTGAGAAACTGAAGAAGCTGATGAGTGCAAATTCTTCAGACCTGCCCATGAACATTGAGTGTTTCATGAATGACATCGATGTCTCTGGAAAACTGAACAGAGGTGCGTTTGAGGAGATGTGTGCAGGACTCTTGACTCGAGTAGAAATCCCACTCCGCAGTGTGTTGGAACAAGCCAGGTTGAAGAAGGAGGACATTTATTCTGTTGAAATTGTGGGCGGTGCTACAAGAATCCCAGCTATCAAAGAGAGAATTGGGAAATTCTTTGGCAAAGAACTCAGCACAACTTTAAATGCAGATGAGGCTGTGGCACGGGGTTGTGCCCTGCAGTGTGCAATCCTGTCCCCTGCTTTCAAAGTCCGTGAGTTTTCGatcacagatttggtgccctaTCCAATCTCCTTGAAGTGGAATTCGGCAGCAGAGGAGGGGCTAAGTGACTGTGAAGTGTTCCCAAAGAATCATGCCGCTCCCTTCTCCAAAGTGCTGACATTCTATCGCAAGGAGCCCTTTTCCTTGGAGGCTTACTACAGTTGTCCTAAAGAGCTACCGTACCCAGATCCCACTATAGGTCAATTTATGGTCCAGAAAGTCACTCCCCAGGCTTCTGGCGAGAGTTCAAAGGTTAAAGTGAAAGTGAGAGTAAACATCCATGGCATTTTCAGTGTGTCCAGTGCCTCTCTAGTGGAGGTGCAGAAATCTGAAGAGGGTGAGGAGCCCATGGATACGGAGCAAAACGTGAAGGAAGAAGAGAACACAATGCAAGTTGACGAAGATCAGAAAGCCCAAAGTGACAACCAGCCGAAAGAAAACGCAGAGAAGAAAGAGGCCGATGAAATGGAGACCTCGCCAGAAGATCCAAAACAGGAGAAGAAGACTGATCAACCCCCTCAGGCCAAAAAGCCTAAAGTTAAAACAAAGACTGTGGACCTTCCAATTGAACACAACCTGCAGTGGCAGCTTGCCAATGATATGCTGAACCTGTTTGTTGAAAATGAGGGTAAGATGATCATGCAGGATAAACTCGAGAAGGAACGAAATGACGCAAAGAACTGCGTGGAGGAGTATGTGTATGAGATGAGAGACAAGCTTCATGGTGCCCTGGAGAAGTTTGTTAGTGAGGCTGACAGAGATACTTTCTCACTGAAACTAGAGGATACCGAAAACTGGTTGTATGAAGATGGAGAGGACCAACCAAAACAAGTGTACATTGATAAACTGGCTGAACTAAAGAAATTTGGTCAGCCCATCCAGGATCGATACCTCGAGGCTGAAGAGAGACCAAAAGCATTTGAAGAccttggaaaacaaatccagCAATACATGAAAATTGTTGAAGCTTACAAAACCAAGGAGGAGCAATACGAGCACTTGGACGCTGCAGAGATGGACAAGGTAGACAAGACCGTCAATGATGCAATGATCTGGATGAACAGCAAAATGAACCAACAGAACAAGACGAGCCTTACACTGGAACCTGTTGTCAAAGTGAAAGAAATCCAGTCAAAAACAAAGGAGCTTGCTTCTGCCTGCAATCCCATTGTCATGAAGCCCAAACCGAAAGTGGAGCCCCCAAAGGATGAGCAGAAGGCGGCAGAACAGAATGGCCCAGTAAATGGACAGGAAAGCACAGAGGCGCAGCAACCTGCCAGCACCGCAAAAGAGGCTGAAGGCACTGGCCAGCCCAACCCAGAATCCACAGAAAACAAGCTGCCTGAGATGGACATTGACTAATTTAAACTACTGCAACTTCCAGATTATACAAGCATCAGAAATATTACGATAGAATTTTGACCATTTGATGTTACTTTTACCATAAATTCTGTCAGCGGCCGACATGGCATGATTTTCcgttcattaaaaatataaaatcaatgcatatATTGACTTgtaaaatcaaattacaaacACTGAATATAAGTACCTTCTTTATGGTCTGACAGTTTTGAGTTGTATGCGGTGTtttatactgttattttttaaatgctagtaTTATAAATTGCAGTTTTCAGTACCACTATTTGGAAAAAATAGTTCAGAAGCTTGAGCCCtgaaataaagaatattaacaaataattaCACTGGGAATTATTAATAGACAAGTGTCAATATctaatatcaaataaaaacagattccCTAATATTTAAAAGGAGAGAGCCTGGTATTGAATAAATGTACTCtcattttgtaaattgattTAAAGTTTTCTTGCATCCCCCCCACTCAAGTTGTATTGTACTGAAATTCAGGGCATGTCTTAACATACAGttcataatctttttttttttatatatatatatacagtatcaGAATTCAATACTgtgcttaaatgtttaaatgttttgaatctACAGATGCATTTATGATTAATGTTCTTGTCACCCAAAAACTAAAAgcattgaaaatgtatgagCACCAAGCAAAAACTTGCTTATGAATAGAAGTCTTGTTACATCCCAACTAGTGGAATAAAGAGTGTTAATTCTTGTTCCTGTACAGTAGTAGTTATACAATTCTGATGTATTGAACATTGGAGCTAATCTAATATTACATTCAGATATAAAATTTAAAGGCTTTATCTTTTGGTTATGGGGAAAGCTGTTCTAcagttattattgtttgttttatttttaacttcagtgacttaagtgtttttttccccgaCATCTTGCCCCCACCTTAAATGGATTTTTTGTCTATAGAATGAGAATTGATAAGAGATCAGCTGAGATCGATCTATTAATGAGTCAATAAGTGGAGGcgggattttttttcttttgtagatTTGTTTGCCGTTTCTGTATCGTAAAGTAACATCTGAACTGGATTGATAAAGCTGAAATGTGACGACGTGTCCTTTTTTCTTGATGCTTGTTTGCTATCACTGTAttcatgatttttatttcacaactgtgaaataaatgcatcaccacattttattttgcttaatctatatgtatatttgaatCCTCTGCAAATATAGTCTTAGAAAGTGTATGTTTGATCGTGGAGGTTAGTTTCAAAATGTCCATTG

Function

NR:

description
PREDICTED: heat shock 70 kDa protein 4-like

GO: NA

KEGG:

id description
K09489 HSPA4; heat shock 70kDa protein 4

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00011243 True 3980 mRNA 0.41 19 15365147 15374868

Neighbor

gene id symbol gene type direction distance location
AMCG00011240 NA coding upstream 47444 15314882 ~ 15317703 (+)
AMCG00011236 NA coding upstream 85586 15273899 ~ 15279561 (+)
AMCG00011235 NA coding upstream 115859 15242239 ~ 15249288 (+)
AMCG00011234 nudcd2 coding upstream 131425 15231447 ~ 15233722 (+)
AMCG00011228 gabrg2 coding upstream 323402 15033939 ~ 15041745 (+)
AMCG00011242 NA coding downstream 2398 15377266 ~ 15381601 (+)
AMCG00011247 ndfip1,LOC106567495 coding downstream 14735 15389603 ~ 15404222 (+)
AMCG00011249 cnot6 coding downstream 181980 15556848 ~ 15565856 (+)
AMCG00011257 NA coding downstream 274869 15649737 ~ 15664041 (+)
AMCG00011254 NA coding downstream 380418 15755286 ~ 15799493 (+)
G105238 NA non-coding upstream 81399 15280455 ~ 15283748 (+)
G105226 NA non-coding upstream 108525 15249738 ~ 15256622 (+)
G105186 NA non-coding upstream 436207 14928643 ~ 14928940 (+)
G105145 atp10d,atp10b non-coding upstream 693598 14671298 ~ 14671549 (+)
G105144 NA non-coding upstream 694219 14670719 ~ 14670928 (+)
G105365 NA non-coding downstream 446440 15821308 ~ 15839105 (+)
G105370 NA non-coding downstream 484890 15859758 ~ 15861690 (+)
G105390 ddx46 non-coding downstream 621509 15996377 ~ 15997732 (+)
G105434 NA non-coding downstream 681297 16056165 ~ 16056449 (+)
G105436 NA non-coding downstream 688046 16062914 ~ 16063749 (+)
AMCG00011241 LOC102221627,LOC107740141,LOC107680337,LOC107593202 other upstream 42489 15320780 ~ 15322658 (+)
G105139 LOC100846954 other upstream 744613 14619690 ~ 14620534 (+)
AMCG00011209 cpeb4,LOC106603870 other upstream 1304120 14013121 ~ 14061027 (+)
AMCG00011210 bod1,LOC107581912,LOC107661728,LOC107713186,LOC107662284,LOC107587245,LOC108278584,LOC106603873 other upstream 1372302 13985665 ~ 13992845 (+)
AMCG00011204 NA other upstream 1486865 13868337 ~ 13878282 (+)
AMCG00011250 NA other downstream 97391 15472259 ~ 15487372 (+)
AMCG00011253 NA other downstream 475778 15850646 ~ 15852389 (+)
AMCG00011252 NA other downstream 478896 15853764 ~ 15855784 (+)
AMCG00011255 LOC106603967,LOC105011194,LOC108410970 other downstream 488164 15863032 ~ 15873489 (+)
G105373 cssa04h5orf24,pcbd2,LOC105890513,LOC100699409 other downstream 588472 15963340 ~ 15984079 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000000_17884239_17897080 HSPA4B, HSPA4 coding CI01000000 null 17884239 ~ 17897080 (-)