AMCG00011251 (gfpt2,LOC106611946,LOC105024910,LOC108240504,LOC107375897)


Basic Information

Item Value
gene id AMCG00011251
gene name gfpt2,LOC106611946,LOC105024910,LOC108240504,LOC107375897
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 15499534 ~ 15515675 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00011251
ATGCCAGTGATAGGGATCTTTGCCTACCTGAATTACAGAGTGCCCCGGACGAGGAAGGAGGTCTTTGAGACACTGGTGAAGGGCCTGCAGAGGTTGGAATACAGGGGATATGATTCTGCAGGCATTGCTGTGGATGGTCAAGGCAAAGATGTGAAGGATTGCAGTATTTGTCTCATTAAAAAGAAGGGGAAAGTGAAGGCCCTAGATGAAGAATTATACaAACAAGACACTTTGGATCTGGAGGCAGAACTGGACACCCATTTTGGGATTGCCCACACACGTTGGGCCACGCACGGAGAGCCCAGCGCACTCAACAGCCACCCCCACCGCTCAGACAAAACCAACGagtttgtggTTATACATAATGGAATTATCACCAACTACAAGGAGCTGAAAAAGTATCTGgAGACAAAGGGATATGAGTTTGAATcggagacagacacagaagtcATTCCAAAGCTCATTAAGTATGTTTATGACAACCGTGAGCGAGATGACATCAGCTTCTCAACACTGGTGGAGAGAGTCATTCAGCAACTGGAGGGGGCTTTCGCACTGGTTTTCAAAAGCAGCCACTACCCAGGCGAAGCAGTTGCCACCAGgAGAGGAAGCCCTCTGTTGATTGGTGTGCGCAGCAAGTATGAGCTGTCCACTCAACATATCCCCATTCAGTACAACAGTGGCCACTTGAAAAAGGAAATCATCGAGAACTGCAAGAAGAGCAGCAGGACCGGCCCCACGTCCTGCCTGCAGTCCGAGGGCATTGCTGAGGCGGTGGAGTACTACTTTGCTTCAGATGCCAGTGCAATCATTGAGCACACCAACAAGGTCATTTACCTAGAGGATGATGACATTGCAGCCGTGACTGCGGGGAAACTGTCCATCCATCGGATGAAGCGTTCTGCAGGGGAAGACCCCGTCAGGGCCATCCAGACACTGCAGATGGAGCTCCAACAGATCATGAAAGGGAACTTCAAAGCCTTCATGCAGAAAGAAATCTTCGAGCAGCCTGAGTCAGTGGTGAACACTATGAGGGGGAGAATCTGTTTTGACAGCAACATAGTGGTCTTGGGTGGGCTGAAAGATCACCTGAAGGAAATCAAACGCTGTCGCCGTCTCATTATGATTGGCTGTGGCACCAGTTTCCACGCAGCAGTGGCTACTCGTCAGATCCTCGAGGAGCTGACTGAGCTGCCCGTGATGGTGGAGTTGGCCAGTGATTTTCTGGATAGGAACACCCCGGTGTTCAGAGACGATGTCTGCTTCTTCATCAGCCAGTCAGGGGAGACAGCAGACACCCTGATGGCTCTGAGGTACTGTAAGGATCGGGGGGCCCTCACTGTCGGCATTACCAACACTGTGGGCAGCTCCATCTCCCGGGACACTGTCTGTGGAGTTCACATCAATGCTGGACCAGAGATCGGAGTGGCCAGCACTAAGAAAATCAAGGAGATTACCTACATGCATTCAGAGGGGATCCTGGCCGGGGAGCTGAAGCACGGCCCCCTGGCTCTCATTGACAAGCACATGCCTGTGATCATGATCATCATGAGGGACGCCTGCTACTCCAAGTGTCAGAACGCCCTGCAGCAAGTCACCGCTCGGCAGGGGCGGCCCATCATCCTATGCTGCCAGGATGACACCGAGAGCACAAAGAATGCCTACAGGACCATCGAGCTGCCGCACACAGTGGACTGTCTGCAAGGCATCCTGAGTGTCATCCCTCTGCAGCTCCTGTCATTCCACCTCGCCGTGATGAGGGGATATGATGTGGACTGCCCACGGAATCTCGCCAAATCTGTCACTGTGGAGTAA
>TU131737
CGCAAGGGTAGTGTAGGAGGGTGAAAGAATGCTTTGGCAACTAAATGTGTTATAAATTAAGAGTGCATTTCTGTCTGATAACCTGCTTTGTGTATAACCCACCTTGGCCTGGCTaccaaacctttaaaaaaaaaaaatctgttcctTCCAGTTGATAATGATCAGAATCGATGCTTCAGGGAGAGCTGTAAAGTTGCTGGAGTGTCGACAGGGCCaatactgaatgtttttttgtgttgcagAAAATCAAGGAGATTACCTACATGCATTCAGAGGGGATCCTGGCCGGGGAGCTGAAGCACGGCCCCCTGGCTCTCATTGACAAGCACATGCCTGTGATCATGATCATCATGAGGGACGCCTGCTACTCCAAGTGTCAGAACGCCCTGCAGCAAGTCACCGCTCGGCAGGGGCGGCCCATCATCCTATGCTGCCAGGATGACACCGAGAGCACAAAGAATGCCTACAGGACCATCGAGCTGCCGCACACAGTGGACTGTCTGCAAGGCATCCTGAGTGTCATCCCTCTGCAGCTCCTGTCATTCCACCTCGCCGTGATGAGGGGATATGATGTGGACTGCCCACGGAATCTCGCCAAATCTGTCACTGTGGAGTAATCATGCAGCAAACTGGAAACCATTGAAGGGAAGATGAAGAAAATGTCTTAATGTACCTGGTTGGGTTATCCTGGGTGTCTATGTGCATgtctacatatatattatatgtttgtgtatgtctgtgcatatatttatacatatttatagagTTCAGGACACTGCACACACCGcagcagtttctgttttttagtatatatggatatataatTACAACACATGGAAAGGTtgataaaatcaatgcattaatAACCATTTAGAAGGACTTAAGTAAAAAAACACTATGCAGTTGAAATCTGTGCCTTAACCTTATATACTTCTTCAGGCTACTGTGGAAGTGATaaggaaacaaatatgtttaCTTGTAGAGCAATATTTGAAGTTAATATTGTGCAATATTTTGGATAGGGGGACCATGTAACTCTGCAGTGAACAGGACAGTGTAAGTTATTGGACATGGTACTGGATGAATGTCTTTCtctatttttaaagtaacaatgtttttcttaaattaaatgcaaggCTATCTCAAAGCATGTGACCTTTTGCACTGATGCACCTACATTCCTCCTTCAGACCAGTAATTTCAGCACATATTCAATTCCAATTTAAAGAAGAGGTTTCAGGTCTCTCTTTGTATTTCTTGTTATTATGGGAATTACGTGAGAACTGGCCTAAAAGAATTGAATGCAACAGAAAGGATTATACTGGAGGACCAAAGTGAAAGCAATGTCCCACCACATAGCGTGCTCTTGGAATTGGCATATTTACAGATAGGACATACGACTACTAAACTATTGTCCAATTTGTAAACTATTTTGTGACATTCTTTCTGAATACTCACactaaaaatacagtttctgaTATCACTATGTATCTTTGCTTACTATGTGGTTGTTTACAGGTTTTCAATCAGAAGCTAAGGTACCAAAAAATATTCAAGGGGAATGTGAGTTTCTCAGTGCAACTATTTTCATAACTTAAAGGTTATTGCATACAATAGaacagtaattgtttttgtttaaaaatgtatggtcGATATTGTATGCCctataagaaaaaataactaaaaataactgAGCCCCTATTATACAAAGTCTGTTTCAACTTTTTAAGTTAACAGAGCTTTCAGTGTCACGTAGTTTAGGTTACTTgtgatttttgtaaaataatttgtttttaagtttttttcatagatcaaataataattgtttacCAAAATTTGTCCTAttaattttcttgcatttattttgttttatttgttatattcttCAAACTGTGAGCGATGCATTAGCTATTTAAAAGATGAAGACCAATTAccttttttaaagatattttatatatttttatgatacTGAGAGGACCTAGAtctgtgaatgttttaaaaatgcataataaaaaatgtttttgtttcaaagtCTCCTAATACACCGTGCAACAACTGTAAGTGGTTGGCAAACATGTAAAACT

Function

symbol description
gfpt2 Predicted to enable glutamine-fructose-6-phosphate transaminase (isomerizing) activity. Predicted to be involved in UDP-N-acetylglucosamine metabolic process; fructose 6-phosphate metabolic process; and protein N-linked glycosylation. Predicted to act upstream of or within carbohydrate derivative biosynthetic process and glutamine metabolic process. Human ortholog(s) of this gene implicated in type 2 diabetes mellitus. Orthologous to human GFPT2 (glutamine-fructose-6-phosphate transaminase 2).

NR:

description
PREDICTED: glutamine--fructose-6-phosphate aminotransferase [isomerizing] 2-like isoform X3

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00011251 False 1815 mRNA 0.52 17 15501001 15515675
TU131737 True 2084 TUCP 0.37 3 15499534 15502133

Neighbor

gene id symbol gene type direction distance location
AMCG00011248 NA coding downstream 55409 15443190 ~ 15444125 (-)
AMCG00011244 NA coding downstream 134644 15361316 ~ 15364890 (-)
AMCG00011246 NA coding downstream 152570 15328336 ~ 15346964 (-)
AMCG00011245 NA coding downstream 204029 15282577 ~ 15295505 (-)
AMCG00011237 sept8,LOC103475354 coding downstream 226906 15247192 ~ 15272628 (-)
AMCG00011261 NA coding upstream 286798 15802473 ~ 15937457 (-)
AMCG00011260 NA coding upstream 459356 15975031 ~ 15977007 (-)
AMCG00011263 cssa04h5orf24 coding upstream 463022 15978697 ~ 15985898 (-)
AMCG00011265 ddx46,LOC107757870,LOC107571605,LOC107713612 coding upstream 471403 15987078 ~ 16000017 (-)
AMCG00011266 NA coding upstream 484469 16000144 ~ 16004390 (-)
G105282 NA non-coding downstream 95301 15385716 ~ 15404233 (-)
G105298 NA non-coding downstream 103142 15391732 ~ 15396392 (-)
G105291 NA non-coding downstream 124771 15373347 ~ 15374763 (-)
G105261 NA non-coding downstream 176822 15298645 ~ 15322712 (-)
G105249 NA non-coding downstream 198683 15233703 ~ 15300851 (-)
G105326 NA non-coding upstream 19695 15535370 ~ 15569124 (-)
G105427 sar1b,LOC106940938,LOC107657201 non-coding upstream 516576 16032251 ~ 16035023 (-)
G105454 zgc:56064,LOC102205414,LOC107684868,LOC107564119 non-coding upstream 623424 16139099 ~ 16141338 (-)
G105473 vdac1,LOC106567523,LOC107557296 non-coding upstream 720453 16236128 ~ 16237685 (-)
G105479 NA non-coding upstream 729021 16244696 ~ 16247301 (-)
G105290 LOC108429417 other downstream 126355 15370402 ~ 15373179 (-)
G105050 NA other downstream 1430973 14067215 ~ 14068561 (-)
AMCG00011211 NA other downstream 1502945 13993983 ~ 13996589 (-)
G104929 NA other downstream 1820272 13665795 ~ 13679262 (-)
G104909 NA other downstream 2132460 13365083 ~ 13367074 (-)
AMCG00011259 pcbd2,LOC107386701,LOC105890513,LOC106941140,LOC103129816 other upstream 447663 15963338 ~ 15973872 (-)
AMCG00011271 LOC107562913 other upstream 527696 16043371 ~ 16098179 (-)
AMCG00011290 rbm27,LOC106567487 other upstream 1428257 16943932 ~ 16961069 (-)
AMCG00011313 NA other upstream 2201951 17717626 ~ 17751099 (-)
G105770 NA other upstream 2235578 17751253 ~ 17751502 (-)

Expression


Co-expression Network