AMCG00011255 (LOC106603967,LOC105011194,LOC108410970)


Basic Information

Item Value
gene id AMCG00011255
gene name LOC106603967,LOC105011194,LOC108410970
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 15863032 ~ 15873489 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00011255
ACATCCTTCCTGTGACTGTATTTTTCAGCTGAAATCTTGGAGCTGGCTGGAAATGCTGCTCGGGATAACAAGAAAGGGCGTGTCACTCCCAGGCATATCCTGTTGGCCATCGCCAATGATGAAGAGCTCAACCAGCTGCTGAAAGGTGTGACAATAGCCGCAGGGGGCGTCCTTCCTAACATTCACCCAGAGTTGTTGGCTAAAAAGCGAGGATCCAAGGGGAAGCTGGAAGCCATCATAACCCCACCTCCAGCCAAGAAATCCAAGACGTCACCTGCAAAGAAATCTACGGCAAAAAAGGCTGGGGGCAAAAAGGGGGCTGGAAAGTCCAAGGGAGAAGTGAGCAAAGCAGCCAGTGCAGACAGCACTACAGAGGGCACCCCAGCAGATGGGTTCACTGTCCTGTCCACAAAGAGCCTGTTCCTTGGGCAGAAGCTGAATCTTATTCACAGTGAAATCACTAACTTGGCTGGATTTGACGTGGAGGGTATAATCAATCCTACCAATGCTGACATTGACCTTAAAGATGATCTAGGTAATGCCCTGGAGAAGAAAGGAGGCAAGGAATTTGGGGAGGCTGTCGGTGAGCTTCGGAAGAAGAATGGGCCATTGGACATAGCAGGAGCTGCCCTGACTGCCGGCCACGGCCTTCCTGCAAAGTTTGTCATCCACTGTAACAGCCCAGGCTGGGGCTCAGATAAGTGCGAGGAGCTGCTTGAGAAAACAGTCAAAAACTGCCTGGCCCTAGCAGACGAAAAGAAGCTGAAATCCATAGCATTCCCCTCAATCGGCAGTGGCAGGAACGGCTTTCCCAAGCAGACTGCAGCCCAGCTAATTCTGAAAGCCATCTCCAGCTACTTCGTCTCCACGATGTCCTCTTCAATCAAAACAGTTTACTTTGTGTTGTTCGACAGTGAGAGTATAGGGATCTACGTGCAGGAAATGGCAAAGCTCGACGCTAACTAAAGCTTTGCCCGTCTTTCATCTAATTTGTTCATTGCTCAGTTCCTAATTTTATGACCCCACTGTGtcataaacacataaacattgTTTCACCATTCTTAATTTATTCTAGATAAATGAAAAActctttttattctttacaattTCCTAAAAATATGGTTGACACTGACAACTGGTTTAATTCTGCACTGTCCCCCCGggtgtatttgaaatgtttgtaattttggtattccttgatttattttaactgaaggGTAGAATGGCATTTCTAATGTTTGGAATATTTTGACCTTTGTGTGGAAGGGAAATGGCaggtacattttgtatttgtgctgtgCTACTTTATGTTGCACccactgtattttcttttccttttatttctttattgaaaCAGGTGCTACAATCTTTATGTTTATactatgtattattaatgttagaGATGGagtgtatgtaaaatgttttagtaaAATATGGGAATGTTGCTGTGGAATGTTTCTTGGCCATTGCTTTtcatcaaatgttttcttctaCAAAGACAAAAGCAcgatttaatttaaagttgcaTTGTTGACTGTAAGAGAGTTTCAGTCAATATTATCACTTTTTCATCAATTAGAATAACTGATGATTATGtgccatattaaaaaaaaaaaaatgtagcccagtgttctcaaacctgtcctagGGACAGCCCTAGCCCAGCTTTTTAATTAACCAACCAGCACTGGATTATTCCTGTTGATATCTGCACTGCTCAATTAACATTAGTGAGCTGTAATATTAGTATATTATACACAACATAAAATCAGTGTAGATATTTCAAGATACGATTGGATTAGTGTGATACACTGCTAATCAAATTTAGGCCTGAACCAAATCCAATTGTGCCCCATGCGCAAATCCCAAATCACAAACTTGTACCCTCTGGTGGTTAATTTATTGGCAGGAGGCACTTCCTAATActtataaataacacaatcagGTGCAGGTTAACACTTTGCAGTTGGCggataggtcaaagttttgatttggtctaggcctaaaTCGGACCATTCTAAGGCAGTGTCAGATAGTGAAGAATCATGTTCACATATTACCACAAGGGGTCACTGTATATCCAGTAATGATTGTCTGAAATTGTGACATTTTGCTCTAGGATGGTATACATGAGAGGGTCAAATGTTCTACTTTCTGCACTTCCCTCTCTTCCAGTAAAACTCTTTATTCTACTGCCTGGTAGTTAAGTATTGTATtggcatcatttaaaaaatatatctttaccacaaaataaatattgcaatatCTTA
>TU131795
GATTAAAACATCCTTCCTGTGACTGTATTTTTCAGCTGAAATCTTGGAGCTGGCTGGAAATGCTGCTCGGGATAACAAGAAAGGGCGTGTCACTCCCAGGCATATCCTGTTGGCCATCGCCAATGATGAAGAGCTCAACCAGCTGCTGAAAGGTGTGACAATAGCCGCAGGGGGCGTCCTTCCTAACATTCACCCAGAGTTGTTGGCTAAAAAGCGAGGATCCAAGGGGAAGCTGGAAGCCATCATAACCCCACCTCCAGCCAAGAAATCCAAGACGTCACCTGCAAAGAAATCTACGGCAAAAAAGGCTGGGGGCAAAAAGGGGGCTGGAAAGTCCAAGAAAAAGCAGGGAGAAGTGAGCAAAGCAGCCAGTGCAGACAGCACTACAGAGGGCACCCCAGCAGATGGGTTCACTGTCCTGTCCACAAAGAGCCTGTTCCTTGGGCAGAAGttgcaAGTTGTGCAGGCTGACATTGCCAACATCGACAGCGACGCTGTTGTTCACCCGACCAATTCCGACATCTACACGGGTGGTGAAGTAGGTAATGCCCTGGAGAAGAAAGGAGGCAAGGAATTTGGGGAGGCTGTCGGTGAGCTTCGGAAGAAGAATGGGCCATTGGACATAGCAGGAGCTGCCCTGACTGCCGGCCACGGCCTTCCTGCAAAGTTTGTCATCCACTGTAACAGCCCAGGCTGGGGCTCAGATAAGTGCGAGGAGCTGCTTGAGAAAACAGTCAAAAACTGCCTGGCCCTAGCAGACGAAAAGAAGCTGAAATCCATAGCATTCCCCTCAATCGGCAGTGGCAGGAACGGCTTTCCCAAGCAGACTGCAGCCCAGCTAATTCTGAAAGCCATCTCCAGCTACTTCGTCTCCACGATGTCCTCTTCAATCAAAACAGTTTACTTTGTGTTGTTCGACAGTGAGAGTATAGGGATCTACGTGCAGGAAATGGCAAAGCTCGACGCTAACTAAAGCTTTGCCCGTCTTTCATCTAATTTGTTCATTGCTCAGTTCCTAATTTTATGACCCCACTGTGtcataaacacataaacattgTTTCACCATTCTTAATTTATTCTAGATAAATGAAAAActctttttattctttacaattTCCTAAAAATATGGTTGACACTGACAACTGGTTTAATTCTGCACTGTCCCCCCGggtgtatttgaaatgtttgtaattttggtattccttgatttattttaactgaaggGTAGAATGGCATTTCTAATGTTTGGAATATTTTGACCTTTGTGTGGAAGGGAAATGGCaggtacattttgtatttgtgctgtgCTACTTTATGTTGCACccactgtattttcttttccttttatttctttattgaaaCAGGTGCTACAATCTTTATGTTTATactatgtattattaatgttagaGATGGagtgtatgtaaaatgttttagtaaAATAT
>TU131796
GATTAAAACATCCTTCCTGTGACTGTATTTTTCAGCTGAAATCTTGGAGCTGGCTGGAAATGCTGCTCGGGATAACAAGAAAGGGCGTGTCACTCCCAGGCATATCCTGTTGGCCATCGCCAATGATGAAGAGCTCAACCAGCTGCTGAAAGGTGTGACAATAGCCGCAGGGGGCGTCCTTCCTAACATTCACCCAGAGTTGTTGGCTAAAAAGCGAGGATCCAAGGGGAAGCTGGAAGCCATCATAACCCCACCTCCAGCCAAGAAATCCAAGACGTCACCTGCAAAGAAATCTACGGCAAAAAAGGCTGGGGGCAAAAAGGGGGCTGGAAAGTCCAAGAAAAAGCAGGGAGAAGTGAGCAAAGCAGCCAGTGCAGACAGCACTACAGAGGGCACCCCAGCAGATGGGTTCACTGTCCTGTCCACAAAGAGCCTGTTCCTTGGGCAGAAGCTGAATCTTATTCACAGTGAAATCACTAACTTGGCTGGATTTGACGTGGAGGGTATAATCAATCCTACCAATGCTGACATTGACCTTAAAGATGATCTAGGTAATGCCCTGGAGAAGAAAGGAGGCAAGGAATTTGGGGAGGCTGTCGGTGAGCTTCGGAAGAAGAATGGGCCATTGGACATAGCAGGAGCTGCCCTGACTGCCGGCCACGGCCTTCCTGCAAAGTTTGTCATCCACTGTAACAGCCCAGGCTGGGGCTCAGATAAGTGCGAGGAGCTGCTTGAGAAAACAGTCAAAAACTGCCTGGCCCTAGCAGACGAAAAGAAGCTGAAATCCATAGCATTCCCCTCAATCGGCAGTGGCAGGAACGGCTTTCCCAAGCAGACTGCAGCCCAGCTAATTCTGAAAGCCATCTCCAGCTACTTCGTCTCCACGATGTCCTCTTCAATCAAAACAGTTTACTTTGTGTTGTTCGACAGTGAGAGTATAGGGATCTACGTGCAGGAAATGGCAAAGCTCGACGCTAACTAAAGCTTTGCCCGTCTTTCATCTAATTTGTTCATTGCTCAGTTCCTAATTTTATGACCCCACTGTGtcataaacacataaacattgTTTCACCATTCTTAATTTATTCTAGATAAATGAAAAActctttttattctttacaattTCCTAAAAATATGGTTGACACTGACAACTGGTTTAATTCTGCACTGTCCCCCCGggtgtatttgaaatgtttgtaattttggtattccttgatttattttaactgaaggGTAGAATGGCATTTCTAATGTTTGGAATATTTTGACCTTTGTGTGGAAGGGAAATGGCaggtacattttgtatttgtgctgtgCTACTTTATGTTGCACccactgtattttcttttccttttatttctttattgaaaCAGGTGCTACAATCTTTATGTTTATactatgtattattaatgttagaGATGGagtgtatgtaaaatgttttagtaaAATAT

Function

NR:

description
PREDICTED: core histone macro-H2A.1 isoform X5

GO:

id name namespace
GO:0006334 nucleosome assembly biological_process
GO:0000786 nucleosome cellular_component
GO:0005634 nucleus cellular_component
GO:0003677 DNA binding molecular_function
GO:0046982 protein heterodimerization activity molecular_function

KEGG:

id description
K11251 H2A; histone H2A

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00011255 True 2270 mRNA 0.41 7 15863039 15873489
TU131795 False 1442 lncRNA 0.45 7 15863032 15872654
TU131796 False 1451 lncRNA 0.44 7 15863032 15872654

Neighbor

gene id symbol gene type direction distance location
AMCG00011256 NA coding upstream 36463 15825613 ~ 15826569 (+)
AMCG00011254 NA coding upstream 63539 15755286 ~ 15799493 (+)
AMCG00011257 NA coding upstream 198991 15649737 ~ 15664041 (+)
AMCG00011249 cnot6 coding upstream 297176 15556848 ~ 15565856 (+)
AMCG00011247 ndfip1,LOC106567495 coding upstream 458810 15389603 ~ 15404222 (+)
AMCG00011258 pitx1 coding downstream 75150 15948639 ~ 15953777 (+)
AMCG00011262 sar1b,LOC107603246,LOC107713617,LOC107668454,LOC107657201 coding downstream 157585 16031074 ~ 16033025 (+)
AMCG00011270 NA coding downstream 246379 16119868 ~ 16124691 (+)
AMCG00011269 ppp2ca,LOC107603261,LOC107692973,LOC107728270 coding downstream 259963 16133452 ~ 16141505 (+)
AMCG00011267 skp1,Skp1,SKP1 coding downstream 270350 16143839 ~ 16148914 (+)
G105370 NA non-coding upstream 1342 15859758 ~ 15861690 (+)
G105365 NA non-coding upstream 23927 15821308 ~ 15839105 (+)
G105238 NA non-coding upstream 579284 15280455 ~ 15283748 (+)
G105226 NA non-coding upstream 606410 15249738 ~ 15256622 (+)
G105186 NA non-coding upstream 934092 14928643 ~ 14928940 (+)
G105390 ddx46 non-coding downstream 122888 15996377 ~ 15997732 (+)
G105434 NA non-coding downstream 182676 16056165 ~ 16056449 (+)
G105436 NA non-coding downstream 189425 16062914 ~ 16063749 (+)
G105438 NA non-coding downstream 193744 16067233 ~ 16067442 (+)
G105448 NA non-coding downstream 259269 16132758 ~ 16132987 (+)
AMCG00011252 NA other upstream 7248 15853764 ~ 15855784 (+)
AMCG00011253 NA other upstream 10643 15850646 ~ 15852389 (+)
AMCG00011250 NA other upstream 375660 15472259 ~ 15487372 (+)
AMCG00011241 LOC102221627,LOC107740141,LOC107680337,LOC107593202 other upstream 540374 15320780 ~ 15322658 (+)
G105139 LOC100846954 other upstream 1242498 14619690 ~ 14620534 (+)
G105373 cssa04h5orf24,pcbd2,LOC105890513,LOC100699409 other downstream 89851 15963340 ~ 15984079 (+)
AMCG00011268 NA other downstream 232097 16105586 ~ 16110381 (+)
AMCG00011293 plac8l1 other downstream 1105003 16978492 ~ 16982241 (+)
G105778 LOC105024433,LOC107752029,LOC107743918,LOC106604409 other downstream 1910674 17784163 ~ 17788050 (+)
AMCG00011328 NA other downstream 3233784 19107273 ~ 19117369 (+)

Expression


Co-expression Network