AMCG00011268


Basic Information

Item Value
gene id AMCG00011268
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 16105586 ~ 16110381 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00011268
ATGGCAGACCTAGATGTGGAAGATTTTGTGAAACAAAACCGTCACTTGGCGGAGGTCGTCGACAATCACAGGTCCGTCTCGGAGAACGAGAAGCAGTGGAAGTCGAGGAGGGAGTTCATCTTTAGAAACATATCCGATTTCGAGGAGACACACATGGACCACCTTCTGGCTTTGTCCATGGTTTGGTCAAATCACATCTTCATGGGTTGCCGGTATAGCCCCGACCTCATGGAGAAGGTGAAGGAAATGGCAGAAGGGATTACGGTTGAAGATGCGcccatttttaaaacaagggaTGAGATCATGAAAGAC
>TU131886
GGGGGACTTCCGCATGCAGTCTCGTAgcgtgttgttgtttgtgtgagtgCATCTGTGTGCAGAAATGGCAGACCTAGATGTGGAAGATTTTGTGAAACAAAACCGTCACTTGGCGGAGGTCGTCGACAATCACAGGTCCGTCTCGGAGAACGAGAAGCAGTGGAAGTCGAGGAGGGAGTTCATCTTTAGAAACATATCCGATTTCGAGGAGACACACATGGACCACCTTCTGGCTTTGTCCATGGTTTGGTCAAATCACATCTTCATGGGTTGCCGGTATAGCCCCGACCTCATGGAGAAGGTGAAGGAAATGGCAGAAGGGATTACGGTTGAAGATGCGcccatttttaaaacaagggaTGAGATCATGAAAGACCGTCGGTAACAGCGCCAAGGCACAGTCCAGTGAACACAAACCCACAGTAACCAGCACAGCGTATGTGGATGCACCTGAGATGAGAGGAATACAACATTATGGACTTTTGTGTGAGATCAATTCCATCAGAGTGGTAAACGGTGCTGGAAGAAAGAGCAATCTGcctctgatttttttatttttaaatgtatgttttgtaacaGTGTAAAATCATCTGGACATCTTTTTaatatgcagtttttttaaaatatttttaaaactctttTATTACCATGTTTGAAATTCTGTTCTGAATGGCAAGTGAAATGTTTCAGAGCTTCAGCCACCAGCATAACCGTAGAACTGAATTATCAGTGCTCCATATATAGAATAACAATTATtgtctctttaaataaatgttatttttctgagGAAGATGTTTGGATTGATGTTTAAGATGTTTTGAATACTAACCttgcaaaacaattacaaagacCATCACACATCTTAAAtcctgtgagtgtgtgagggCAGGGAGGTCAGAGCCATTCTGGAAGGCAGCCCTGTCTTTAGttctaattgcttaattgttgTAATTACTTGATATATTGAACTACTTGGAAGACTTCATTCCTGTTCTCACAATGCtttattgcaattttttttaatcaacccTAACTTGTCTGGAGACAAAATGACCATTTGAGCAAATTATATTAGTTCAATTagtaaagattttaaattggAACAACCACCAAATGACCCCACAGCCCTGAGGACTGGCGTTTGACACCCCCTTTTTAAGTATTGCAAATCATACTTCTGATCCCAGCGTTTCATTTAGACCTGGGATGTTTTTCCCCATCTTGACCTGTgctgtgttttgattttgctCCTTGATCTATTGAATTGAATCATGTATTCACTGGTGCATAAATCAAACTTactgttttcttaaaaatacagctttttaTTCGGTTTTAATAAATGCcttgtaaaaataacaatctgTTGTGTATGTAATGTAAGTCATTACAGTGTCCCCTGTTGAGATCTTTTAAATGAACTGCATGGTATTACTGTGCAAGGCTGTGGTTAGAAATCATTTTGGTTCAGTTACAGATTAACTAGCCCTCTGGTACATTCAAGTGGATTAAACCTCTTGTATGTTCCAATTATTCAAGTGTTTGAAATTAGATGCTAATGTTGCTTCAAACTAATTACAAATCTGCATGCCTATTTTGAAAACACTAATCAGGTATGCCATGCTTTCTTAGTGTAGAAATCAGAGTCACCAGAAGGCTTGGGCTTGTCTTGGGCCAGGTGTGTTAAGTCTTTGGGGAGGAGGCACTTTTGATCTTCTCGCTGAAACCACCAGCCTCTTCCAGCTCCAAGGTGATCAGGCCGATTACTTTTTGGGTGAGAAGAAAACCTTCATCCCCCTCATAGGAATGAGGAGCCTTGCCTCAATATTCACAAGAACAATTGCATTCCCTACAGACTGCACAAGATCAAACACAAAATGCGTTCCTCTCAGGCAGGATAGCTGTGGCTCTTCCACACGGGATCACACAGCCCCGCGCTTCTGATCGCATTAGTTGCATACCTGGAGAACACCGTGCTTAATTTTGGAGAGCTGAAGAGAGAAACGGATTTGTTTGAGATGGGGTTGTTGGGCAGCAGTTTATCAGCACCTGTACTTAATTGTTGCCAATTCCACCGTATCGATGACGCTGATGCCGGTGGAGCAGATTTGGGTGCTTGTGCGCGgctgtttccatggcaaccGTGCTGTGCTCTGGGGTTCAGATGCTATTCAGGGTAACTGAACTGGGAGGGAAAAAACTACAAGGAGTCaagaatttaaaaacacattcactgtGTACAGTAGACATCAATTCCACACTCAAGTGTCATCTCAAAgtctgcaaaatgtttttttttttatttatgtttatacaGCATATTAGAAGTATACATTATGTCTTAATAAATTCACAAAACTAACTTTATAACATCTCCCTTCTCGTAATAAGTGGAAACTGAACACTGAATCCACGACgtaatcaatattttctctaaataaaatctgattttaatgaaaagtgtCTGCCACCCTTGAAGTGTTTTCTGGTACACaacgggggagggggggggtgatgAACAAACACTATTTTCGGTGACCTTTAATTGGATGCCGCGTAAGAATCTACAGAAAGAGAACAAACGAAAAGGAGAGCGAGGCCTGTCATAAGCAGTGTCCACAGCAGGTCAGCAGGTGGGCGCAGAATCCTTCATTGATGCTTTTACCAAACTAACAGCAGTTGAAATATTAATCACAATGCACttgttaaatgtgtttcagGTCAGATGCTGATCTGTATTTTTGCTATAAAGTCCTCTATACAGGTGATGAGGTTTCCTTTTGACATGACCTTACTTTGCAAGTTGATAGCTCCTATGCcaatttgtcttttttacatattttttttccaagcagACCTGGGAACACCAGTTTTAATTATGGAAAAGTCATTTATAAACTACAGTTGGGATAGACATGACCTATACTGCAAGAGGGAACAACtactttcctgtttttgttatgACAGGTCTGTGATCCTGATGAGATCATTGATATTTTTCACAGAGcagcctttttatttattttttttagacaaaaataaaaagagacatCCGCCATTGCACAGATAAGATTGACAACAAACACTAACAGCCAGTTTTCTTCAAACcaagagaaacatttaaaaagaaatcgTTTGGTCGAAACTGAACAGTAACAGCATCaatccaacaaaaaaaaaaagaagaaaaaaagatatattACAAGTTTTGTTAGCAATAACTTATTTCACATCAtgcaataaaaaattaaaaacaataacacaaacctCAAAGGTTGATATTCTTCAAACGAGTTGGCAAGCAAGTAAAAgtccctatttatttatttatttttaacttgtggCACTTAAAGTTCTTCTGTTGTTGACTTTTGTTCTTGATGAGGTAAATGAAAGATTCCGGTTCGTAACAGTGGTGGAGGAGCCCTCGTTTCTGTGTTAGGAGTCGTTCCAGCTTTGCTCTACAATAGCAGATACCCTCTTCTCATATTCCCTCTTGTTCTCTTGGTAAAGCTGTGCAGCCTGACTGTTGGCTGGACTGTTGGGGTTT

Function

GO:

id name namespace
GO:0006396 RNA processing biological_process
GO:0007029 endoplasmic reticulum organization biological_process
GO:0010256 endomembrane system organization biological_process
GO:1990904 ribonucleoprotein complex cellular_component
GO:0044428 obsolete nuclear part cellular_component
GO:0043226 organelle cellular_component
GO:0043229 intracellular organelle cellular_component
GO:0004527 exonuclease activity molecular_function

KEGG:

id description
ko00240 Pyrimidine metabolism
ko03020 RNA polymerase
ko03040 Spliceosome
ko03013 Nucleocytoplasmic transport
ko03008 Ribosome biogenesis in eukaryotes

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00011268 False 312 mRNA 0.48 2 16105650 16106386
TU131886 True 3550 lncRNA 0.39 3 16105586 16110381

Neighbor

gene id symbol gene type direction distance location
AMCG00011262 sar1b,LOC107603246,LOC107713617,LOC107668454,LOC107657201 coding upstream 72561 16031074 ~ 16033025 (+)
AMCG00011258 pitx1 coding upstream 151809 15948639 ~ 15953777 (+)
AMCG00011256 NA coding upstream 279017 15825613 ~ 15826569 (+)
AMCG00011254 NA coding upstream 306093 15755286 ~ 15799493 (+)
AMCG00011257 NA coding upstream 441545 15649737 ~ 15664041 (+)
AMCG00011270 NA coding downstream 9487 16119868 ~ 16124691 (+)
AMCG00011269 ppp2ca,LOC107603261,LOC107692973,LOC107728270 coding downstream 23071 16133452 ~ 16141505 (+)
AMCG00011267 skp1,Skp1,SKP1 coding downstream 33458 16143839 ~ 16148914 (+)
AMCG00011276 vdac1,LOC107557296,LOC106603817,LOC106567523 coding downstream 123224 16233605 ~ 16240750 (+)
AMCG00011275 cunh5orf15,kct2,si:ch73-269m14.2,c18h5orf15,LOC107557298 coding downstream 132946 16243327 ~ 16247084 (+)
G105438 NA non-coding upstream 38144 16067233 ~ 16067442 (+)
G105436 NA non-coding upstream 41837 16062914 ~ 16063749 (+)
G105434 NA non-coding upstream 49137 16056165 ~ 16056449 (+)
G105390 ddx46 non-coding upstream 107854 15996377 ~ 15997732 (+)
G105370 NA non-coding upstream 243896 15859758 ~ 15861690 (+)
G105448 NA non-coding downstream 22377 16132758 ~ 16132987 (+)
G105466 NA non-coding downstream 89668 16200049 ~ 16200299 (+)
G105538 NA non-coding downstream 614307 16724688 ~ 16725153 (+)
G105684 NA non-coding downstream 1199378 17309759 ~ 17312068 (+)
G105715 NA non-coding downstream 1268239 17378620 ~ 17378860 (+)
G105373 cssa04h5orf24,pcbd2,LOC105890513,LOC100699409 other upstream 121507 15963340 ~ 15984079 (+)
AMCG00011255 LOC106603967,LOC105011194,LOC108410970 other upstream 232097 15863032 ~ 15873489 (+)
AMCG00011252 NA other upstream 249802 15853764 ~ 15855784 (+)
AMCG00011253 NA other upstream 253197 15850646 ~ 15852389 (+)
AMCG00011250 NA other upstream 618214 15472259 ~ 15487372 (+)
AMCG00011293 plac8l1 other downstream 868111 16978492 ~ 16982241 (+)
G105778 LOC105024433,LOC107752029,LOC107743918,LOC106604409 other downstream 1673782 17784163 ~ 17788050 (+)
AMCG00011328 NA other downstream 2996892 19107273 ~ 19117369 (+)
G105916 NA other downstream 3111674 19222055 ~ 19222421 (+)
G106139 LOC108275110 other downstream 3984848 20095229 ~ 20162966 (+)

Expression


Co-expression Network