AMCG00011272 (ube2al,ube2a,ube2b,LOC105934920,LOC103029486,LOC103021436,LOC104955100)


Basic Information

Item Value
gene id AMCG00011272
gene name ube2al,ube2a,ube2b,LOC105934920,LOC103029486,LOC103021436,LOC104955100
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 16110270 ~ 16114959 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00011272
ATGTCTACCCCGGCCCGGAGACGACTTATGAGAGATTTCAAACGgCTTCAAGAAGACCCACCTGCTGGAGTCAGTGGCGCTCCatctgaaaataacataatgtTGTGGAATGCAGTTATATTTGGCCCTGAGGGTACCCCGTTTGAAGATGGAACTTTTAAGCTTGTGATAGAATTTTCAGAAGAGTATCCAAATAAGCCCCCGACTGTCAGATTCATCTCAAAAATGTTCCATCCGAATGATGGCAGTATATGTTTAGACATCCTTCAGaatcgctggagtcccacataCGATGTCTCATCCATTTTGACCTCTATCCAGTCTCTGTTGGATGAACCAAACCCCAACAGTCCAGCCAACAGTCAGGCTGCACAGCTTTACCAAGAGAACAAGAGGGAATATGAGAAGAGGGTATCTGCTATTGTAGAGCAAAGCTGGAACGACTCCTAA

Function

symbol description
ube2al Predicted to enable ubiquitin conjugating enzyme activity. Predicted to be involved in DNA repair; proteasome-mediated ubiquitin-dependent protein catabolic process; and protein ubiquitination. Predicted to be part of HULC complex. Human ortholog(s) of this gene implicated in syndromic X-linked intellectual disability Nascimento type. Orthologous to human UBE2A (ubiquitin conjugating enzyme E2 A).
ube2b Predicted to enable ubiquitin conjugating enzyme activity. Predicted to be involved in DNA repair; proteasome-mediated ubiquitin-dependent protein catabolic process; and protein ubiquitination. Predicted to be part of HULC complex. Orthologous to human UBE2B (ubiquitin conjugating enzyme E2 B).
ube2a Predicted to enable ubiquitin conjugating enzyme activity. Predicted to be involved in DNA repair; proteasome-mediated ubiquitin-dependent protein catabolic process; and protein ubiquitination. Predicted to be part of HULC complex. Human ortholog(s) of this gene implicated in syndromic X-linked intellectual disability Nascimento type. Orthologous to human UBE2A (ubiquitin conjugating enzyme E2 A).

NR:

description
ubiquitin-conjugating enzyme E2 A-like

GO:

id name namespace
GO:0006301 postreplication repair biological_process
GO:0060135 maternal process involved in female pregnancy biological_process
GO:0033522 histone H2A ubiquitination biological_process
GO:0009411 response to UV biological_process
GO:0008284 positive regulation of cell population proliferation biological_process
GO:0051865 protein autoubiquitination biological_process
GO:0006511 ubiquitin-dependent protein catabolic process biological_process
GO:0070936 protein K48-linked ubiquitination biological_process
GO:0070979 protein K11-linked ubiquitination biological_process
GO:0002474 antigen processing and presentation of peptide antigen via MHC class I biological_process
GO:0001701 in utero embryonic development biological_process
GO:0001741 XY body cellular_component
GO:0005829 cytosol cellular_component
GO:0033503 HULC complex cellular_component
GO:0005524 ATP binding molecular_function
GO:0004842 ubiquitin-protein transferase activity molecular_function
GO:0031625 ubiquitin protein ligase binding molecular_function

KEGG:

id description
K10573 UBE2A, UBC2, RAD6A; ubiquitin-conjugating enzyme E2 A

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00011272 True 450 mRNA 0.45 6 16110270 16114959

Neighbor

gene id symbol gene type direction distance location
AMCG00011264 sec24a,LOC102796029 coding downstream 85521 16004972 ~ 16024749 (-)
AMCG00011266 NA coding downstream 105880 16000144 ~ 16004390 (-)
AMCG00011265 ddx46,LOC107757870,LOC107571605,LOC107713612 coding downstream 110253 15987078 ~ 16000017 (-)
AMCG00011263 cssa04h5orf24 coding downstream 124372 15978697 ~ 15985898 (-)
AMCG00011260 NA coding downstream 133263 15975031 ~ 15977007 (-)
AMCG00011274 tcf7 coding upstream 34777 16149736 ~ 16177066 (-)
AMCG00011273 NA coding upstream 83161 16198120 ~ 16199539 (-)
AMCG00011279 rapgef6 coding upstream 425698 16540657 ~ 16579592 (-)
AMCG00011281 NA coding upstream 522337 16637296 ~ 16664404 (-)
AMCG00011283 NA coding upstream 549954 16664913 ~ 16699921 (-)
G105427 sar1b,LOC106940938,LOC107657201 non-coding downstream 75247 16032251 ~ 16035023 (-)
G105326 NA non-coding downstream 541146 15535370 ~ 15569124 (-)
G105282 NA non-coding downstream 706037 15385716 ~ 15404233 (-)
G105298 NA non-coding downstream 713878 15391732 ~ 15396392 (-)
G105291 NA non-coding downstream 735507 15373347 ~ 15374763 (-)
G105454 zgc:56064,LOC102205414,LOC107684868,LOC107564119 non-coding upstream 24140 16139099 ~ 16141338 (-)
G105473 vdac1,LOC106567523,LOC107557296 non-coding upstream 121169 16236128 ~ 16237685 (-)
G105479 NA non-coding upstream 129737 16244696 ~ 16247301 (-)
G105553 NA non-coding upstream 540288 16655247 ~ 16725153 (-)
G105607 NA non-coding upstream 779001 16893960 ~ 16895074 (-)
AMCG00011271 LOC107562913 other downstream 12091 16043371 ~ 16098179 (-)
AMCG00011259 pcbd2,LOC107386701,LOC105890513,LOC106941140,LOC103129816 other downstream 136398 15963338 ~ 15973872 (-)
AMCG00011251 gfpt2,LOC106611946,LOC105024910,LOC108240504,LOC107375897 other downstream 594595 15499534 ~ 15515675 (-)
G105290 LOC108429417 other downstream 737091 15370402 ~ 15373179 (-)
G105050 NA other downstream 2041709 14067215 ~ 14068561 (-)
AMCG00011290 rbm27,LOC106567487 other upstream 828973 16943932 ~ 16961069 (-)
AMCG00011313 NA other upstream 1602667 17717626 ~ 17751099 (-)
G105770 NA other upstream 1636294 17751253 ~ 17751502 (-)
G105793 NA other upstream 1884709 17999668 ~ 18000445 (-)
AMCG00011316 LOC107664359,LOC107560145,LOC108427843,LOC107752026,LOC105007072,LOC103354679 other upstream 2065687 18180646 ~ 18191195 (-)

Expression


Co-expression Network