AMCG00011276 (vdac1,LOC107557296,LOC106603817,LOC106567523)


Basic Information

Item Value
gene id AMCG00011276
gene name vdac1,LOC107557296,LOC106603817,LOC106567523
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 16233605 ~ 16240750 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00011276
CCCATATGCATCAGTCACAGTGATAGTGTATTGATTCGTGTGCTGTGATCATGGTGCAGAAATGTACTGGATTGTGACATCCTCTCAGTGGCATTACCCATCATATTTCAAaaaatggCAATTCCACCAACTTATGTTGACCTTGGCAAGTCTGCCCGAGATGTGTTCACCAAGGGATATGgttttgGTCTTATAAAgttggatttaaaaacaaagtcgGAAAATGGACTGGAATTCACCAGCTCAGGGTCTGCGAACACTGAAACCAGCAAAGTGACAGGCTGCCTGGAAACCAAGTATAAGTGGGCGGAGCACGGCTTGACTTTCACCGAGAAATGGAACACTGACAACACCTTGGGGACGGAGATCACTATCGAAGACCAGCTTGCCAAAGGATTGAAGCTGACTTTCGACTCATCATTTTCACCAAACACTGGGAAAAAGAGTGGTAAGATTAAGACTGGCTACAAGAGAGAGCACATCAATCTGGGCTGCGATGTAGACTTCGACATTGCCGGGCCCTGCGTACGCGGAGCCATGGTGTTCGGCTATGAGGGCTGGCTGGCCGGCTACCAGATGACCTTCGAGACTGGGAAATCAAGGGTCACTCAGAGCAACTTTGCCGTTGGATACAAGACGGATGAGTTCCAGCTCCACACAAATGTGAACGATGGGACAGAGTTTGGGGGCTCCATTTATCAGAAGGTGAATGACAAACTGGAAACAGCTGTCAATCTAGCCTGGACAGCTGGAAATAGCAACACCCGCTTTGGAATTGCAGCGAAATATCAGATTGATGCAGATGCGTCGTTCTCCGCCAAAGTGAACAATTCAAGCCTAATTGGATTAGGATACACCCAAACCCTAAAGCCAGgcatTAAACTGACACTGTCAGCTCTGCTGGACGGTAAAAACATCAATGCTGGTGGTCATAAACTGGGTCTAGGACTGGAGTTTGAAGCGTAGAACACTGAGCTGCACAATCCTGAACTTCCAAATATGTTCATGAATAGCTACCCTCACAACCTGGTGTTTACCTTGTATGTGTACCatgtgggaaaaaagtattattgtacTGTCAATCATGCTACTGATGATCTGCAATTCTTAGAGGACAACTGAAcctaaaatgtattgcattccTGGGCCAAAttgtggaaacaaaataaaaagataaaatataatacttgATGGTAGTCAGTAGATGATAGTTTGCACAAAATTCAGATTAATTTACAATGTCATAAGATTTCTGTTATAAATCATTGTCATTCCACTACTGCATTTTTAGTCCTTTGagcatatatataatatttcttcagttttttttttttttttgtaaaggcaATAAGCTTGGTTGAATTATTTAAGTGGTTTTGGGGAAACAAAAACCTGCATGCTTATTCCACTGGGTGGGGTTATTGTACATGCATCTCTTGTATCACCTATGCTGCCAATTGGTGCTGCACAATTGTTTCTTGCCTGTTTTTGAACATTACTGTAGTGAATTTTCTAAGTCAAATAACTCTAAGTCAAATAAATTAAGGGAAATGTCTGATTCAACTTAAGCGGTGTGGGTAGGTTTAGTTGTCCTTCACTTATGCAACTGTAGTTAAAAAAGGCACTAAACTGTTGTATACTTGTAATGCATATGATccacttgtgtttgtgtgtgctatAATTTTAGTGGGAATATTTTCTGTTGTCACATATAAGTTTACAGCAACATTTCAAGGATGTTCATGTCTTCTTCCCCCTGCCTGTAAATTAAGACTATAATCTGTTTAGTGAGCCATATGAATGGAAGAATCCTTACTGCACCCCTGTACACAACCAGTCTTGAAAGCAACACATGCTTTTGATCCTTAAAATTGGTGCATTTTAATAGGAAATGTAGTCTTCCAATTATGATGTTAAACTAGGTCCAAAACCCATCGTACTTGACAGTACTGTTATAccctaaaattaaattaatatcttTATCTTTACTGATTCTGTGTCGCTgtttttaattggttaattaaccACTTTAATGCATAAAAGCAAATACAAGCGTGATATagaattttgaaataaattgaaaagaTAGAaactaacaaattaataaagagAAAACTCACAAAAGTTGTTAGCTATTGTCTTGGAACTCTCACTATCATTATGAAGAATTCTGTTGCTGTGTCCTGTTAGTTTGACATCCTATATCTTTGGATATAGAGGGAAATATACCTaccagtattttttttgtagagCTCAATACTAGCATTCTGTAAAGATAGATTTTTAAGAGATTTGATTCATCCACCTCATAATGCAAATGTTAGCTTCGTGTTTGCAAGAAGTACCTTGTCTACTCTGTGAAAACCCATCTTCCAAGTATTTGGTTTGGGTGATTTGAGTTGaaatttagtttaaatgttaacTTTGGACTAGTAGAATTGCTTTACAATGTTCACAATCATACATACTTAAATTACAGAGTATAAAAATaggtgcatttttaaattgctctCCAGGTCACTGGAAAAAGACATTGTCCTGTTCTACTGTAGGCATTTTCTTCCACAATGTGAAAGTGTATGCACATTCTGTCTATGAAGGTAAACCTTGTTAATTATCTGATTGTATGAATGCTCCTtctcaaattaaatacagaaaattgcctgaaaatatgtacaatcaggatgaaaa

Function

symbol description
vdac1 Predicted to enable voltage-gated anion channel activity. Predicted to act upstream of or within anion transmembrane transport and apoptotic process. Predicted to be located in membrane raft; mitochondrion; and plasma membrane. Predicted to be integral component of membrane. Predicted to be part of pore complex. Predicted to be active in mitochondrial outer membrane. Is expressed in brain. Human ortholog(s) of this gene implicated in prostate cancer. Orthologous to human VDAC1 (voltage dependent anion channel 1).

NR:

description
voltage-dependent anion-selective channel protein 1

GO: NA

KEGG:

id description
K05862 VDAC1; voltage-dependent anion channel protein 1

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00011276 True 2691 mRNA 0.38 9 16233605 16240750

Neighbor

gene id symbol gene type direction distance location
AMCG00011267 skp1,Skp1,SKP1 coding upstream 84691 16143839 ~ 16148914 (+)
AMCG00011269 ppp2ca,LOC107603261,LOC107692973,LOC107728270 coding upstream 92100 16133452 ~ 16141505 (+)
AMCG00011270 NA coding upstream 108914 16119868 ~ 16124691 (+)
AMCG00011262 sar1b,LOC107603246,LOC107713617,LOC107668454,LOC107657201 coding upstream 200580 16031074 ~ 16033025 (+)
AMCG00011258 pitx1 coding upstream 279828 15948639 ~ 15953777 (+)
AMCG00011275 cunh5orf15,kct2,si:ch73-269m14.2,c18h5orf15,LOC107557298 coding downstream 2577 16243327 ~ 16247084 (+)
AMCG00011278 NA coding downstream 185264 16426014 ~ 16427017 (+)
AMCG00011277 NA coding downstream 212320 16453070 ~ 16471261 (+)
AMCG00011280 NA coding downstream 465577 16706327 ~ 16712776 (+)
AMCG00011285 NA coding downstream 507481 16748231 ~ 16755779 (+)
G105466 NA non-coding upstream 33306 16200049 ~ 16200299 (+)
G105448 NA non-coding upstream 100618 16132758 ~ 16132987 (+)
G105438 NA non-coding upstream 166163 16067233 ~ 16067442 (+)
G105436 NA non-coding upstream 169856 16062914 ~ 16063749 (+)
G105434 NA non-coding upstream 177156 16056165 ~ 16056449 (+)
G105538 NA non-coding downstream 483938 16724688 ~ 16725153 (+)
G105684 NA non-coding downstream 1069009 17309759 ~ 17312068 (+)
G105715 NA non-coding downstream 1137870 17378620 ~ 17378860 (+)
G105756 NA non-coding downstream 1494240 17734990 ~ 17742387 (+)
G105769 NA non-coding downstream 1510500 17751250 ~ 17751484 (+)
AMCG00011268 NA other upstream 123224 16105586 ~ 16110381 (+)
G105373 cssa04h5orf24,pcbd2,LOC105890513,LOC100699409 other upstream 249526 15963340 ~ 15984079 (+)
AMCG00011255 LOC106603967,LOC105011194,LOC108410970 other upstream 360116 15863032 ~ 15873489 (+)
AMCG00011252 NA other upstream 377821 15853764 ~ 15855784 (+)
AMCG00011253 NA other upstream 381216 15850646 ~ 15852389 (+)
AMCG00011293 plac8l1 other downstream 737742 16978492 ~ 16982241 (+)
G105778 LOC105024433,LOC107752029,LOC107743918,LOC106604409 other downstream 1543413 17784163 ~ 17788050 (+)
AMCG00011328 NA other downstream 2866523 19107273 ~ 19117369 (+)
G105916 NA other downstream 2981305 19222055 ~ 19222421 (+)
G106139 LOC108275110 other downstream 3854479 20095229 ~ 20162966 (+)

Expression


Co-expression Network