AMCG00011281


Basic Information

Item Value
gene id AMCG00011281
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 16637296 ~ 16664404 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00011281
ATGCCTCCGACGTTGTTTCAAaaactttttaataaaagaaatgCTTGCTCGCCGCCCCCGAAGTGCAGTAAAGAGGAGCAGACCTTCAGCTGGCCTTCTGGGGAGTTGGAACCAAGCCAGATCAGACTGATAGTGTATCAGGACTGTGAGAGACGTGGGAGAAATGTCCTCTTTGACTCCAACACCAAAAAGAAGAACACGGAAGAAACACCTGTTTCGAAGCTCTGCAGCGATGCCCAGGTGAAGATGTTCGGGAAGTGCTGTCAGCTGAGGCCCGCCGGCGGCAGCTCCAGCTCTCTGgacagctcctcctcctcctcggccTCGGAGCCAAAAGAGCCGGCTTCCCGATACCAGGGCTCCCGTTGTTCATCTGATGCCAACATGCTGGGGGAAATGATGTTCGGGTCTGTGGCGATGAGCTACAAAGGATCCACCCTTAAAATCCATCAGATACGCTCCCCTCCTCAGCTGATGCTGAGCAAAGTGTTTACAGCCCGGACTGGAAGCAGTGTTTATGGCAGCCTTAACACATTGCAAGACAGCCTTGAGTTCATCAATCAAGATTCCAATGCTTTAAAACCAGATCAGAACACTGTGGTGAACGGCCTCCTAGGGAATATAGGTTTTTCACAACTCTGCAGCCCCCGACGGGCGTTCTCTGAGCAGGGCCCTCTGCGTTTGATCAAGAGTGCCTCTTTCTTTTCAGGCCACAGTAATCCCATGGACATGCCTGGCAGAGGACAAAATGAAGAAAGAGATTGTGGGATAGCCAGATCAGCGTCTCTCAGCAGCCTGCTGGTCACACCGTTCCCCTCCCCGGGCTCCTCgctcagcagcagctgtgccaGCAGCTACCAGAGACGCTGGCTGCGCAGTCAGACCACTAGCCTGGAGAACGTGGAGGAAAGCTTTAATATGTCTGATGACAGTGGTGGTCCAAACCTGGGAGTCATGCGGAAAAAAAAGATAGCGATTGGCGTCATCTTCCTCCTGTCACAAGACGAAGAGGAAAGTAACAAGTTTCAAGACTTCTTCTTCTCTCACTTCCCACTGTTTGAAAGTCACATGAACAAACTCAAAAGTGCAATTGAACAgGCAATGAAAATGAGTCGTCGGTCAGCTGATGCCAGTCAGAGAGCTCAGGCTTACAGCCGCATTGTAGATGCTCTGAATGAATTTAGGACGACCATCTGTAACCTTTACACCATGCCTCGGATTGTGGAGCCTGTTTGGCTCACAATGATGTCGGGGATTCCGGAGAAAAACCATCTTTGTGGGCAGTTTATGAGGGAGTTTGCCTTTCTGATGGAGCAAGCCTCAAAGAACCAGTTCCTGCCAGCAATCCTCACTGCTGTCCTCACCAACCACCTGGCATGGGTCCCCACTGTCATGCCAAATGGACAACCGCCCATTAAAATCTTTCTGGAAAAACATTCCTCCCAGAGTGTGGACCTGCTGGCGAAAACACACCCGTATAACCCTCTGTGGGCTCAGCTAGgtgACTTATATGGTGCTATTGGTTCCCCAGTCAGACTGTCTAGGACTGTGGTGGTGGGCAAGAGACAGGATCTGGTCCAGCGATTGCTTTATTTTCTCACCTACTTCATACGCTGTTCTGAGCTCATAGAGACTCACCTGGTGGAAAGCGGCGAAGACGAGGCCATCGTCATGCCTGGCTCTCTCATTACAACATCACTGCGGAAAGGGGAGGTGGAGGACTCGGAGTATGTTCTTGTCAccatgcacaaacacagaagtGATTACCTGTCTCAAAGGCCCGACggggaagaaaaatatatttctggtAACGGCTGTCAAAGCAGCACGTACGCTGACGGAGCGTGTTTGGGGATGGACCGCACAAGCCAGGAAAAGGTCTGTAACCAAAGCACGAAGAGCAGCGTTCTCCAGTCCTTGTTTACTAAAAGCACTCTACCAATTATCCGCACAGAGGATGTCGGTGATCTGCAGCCATATAAAGAGAAGGCAACAAACCACTGCTTGGACACAAAGCTGGAGACAGTAGTCTGCGTTGGGTCTGCCTTGAGGGACCAAGGGTCAGTGCTGGAGGCCGCGCTGGAGCCGGGCGTTGAAGCCAGGGCTGCTGATGAGAAGGCAGAGGCTGGGAGCATGCCCATCAAAGTGTTCCGCTCCTCAGGAATACCACTGGAGAAAAAGCCACCGGATAAGAACCTGTCTTCCACCTTCAGGTGTGACGAGGAGCAGCCTTCCACTAAAGTGACCTTTTTGATCGGGGACTCAATGTCACCAGACTCCGACATGGAATCCAGGAGGCAAAAAGTAGAggaacaaataaagaaacaccGAAAGCAGCTGAAGGAGAAGCCGCAGGGTAGCAGTGAGCAGATGTCTAGGTCAAAGAACATTTCAGAGGACCAAACCAAGACCAATGTGACCAAGGAAACATTGCCCCGTGTGGCCAGCACTCTACCACAATGGGACCCCCCCTCCCAGGACATATGCATAGACTTATTTGATGAGTATTTCAATGAGGATAACCCAGTGGAAACCCGGACTATTGACGATGTGTTAAATAAAGAGGAATCGGACAGctcagacaaaacaaagaatgaGCTTTTGGATGCCTCGAAGAAAGACAGGGTTTTCCCTACTAATGAAGGCCAGAATGAACTGGACAACAGTACATGTTGTTGTGGTTCAATTGACGTCATGAATGGAGGCTTTTGTAGGAGTTGTTCTGCTGACCAGGACAGAGGAATTGTAATTTCAGTTACCGTCCCCCAAGGGGACACGATAGACCTGAAAAAGGCCACCCCACTTAATGAGTGGGAAATCCCAAGAAACGAGAGCTCGGACAGTGCCCTGGGGGACAGCGAGAGCGAGGATGCTGGTCACGACCTCCAAAGGCACGACAGCAGTTACTATGGAGAGGAACAGGAGGAATGGATGGATGAGGTGGAGATACCATTACCAGGgtCTAAATTAGTTGAGATGAGTTTCTCCAAGCCAAGCATTGCAAATTTTGGAAGGTCTCTGTTTGGTGGATACTGTCCGACCTATGTCCCCGACTTTGTTCTGCATGGGACGCCCAATGATGAGAAGCTTAAGCAATGCCTAATGGCAGATTTGGCCCATGCTGTACAGCATCCAGTTTTGGATGAACCCATTGCCGAAGCTGTCTGCATTATCGCAGACATGGATAAGTGGACGGTGCAGGTGGCCAGCAGCCAGAGACGAGCCACAGAGAACAAACTTGGCAAAGAGGTCCTGGTGTCCAGCCTCATCTCCAACTTACTGCAGTCCACTCTGCAGCTTTACAAGCTCAAACTGTCACCCAACTTTTGTATTATGCACCTTGAAGACAGACTGCAGGAGTTgtatttcaaaagtaaaatgcTTGCAGAATACCTGAAAGGACAGACAAGAGTGCATGTGAAAGAGCTTGGAATGGTACTAGGGATCGAATCCAGTGATCTTCCTTTGCTGGCAGCGGTCGCAAGCACTCACTCTCCACACGTGGCCCAGATATTGCTGTAG

Function

GO: NA

KEGG:

id description
K20400 FNIP1; folliculin-interacting protein 1

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00011281 True 3522 mRNA 0.50 18 16637296 16664404

Neighbor

gene id symbol gene type direction distance location
AMCG00011279 rapgef6 coding downstream 57704 16540657 ~ 16579592 (-)
AMCG00011273 NA coding downstream 437757 16198120 ~ 16199539 (-)
AMCG00011274 tcf7 coding downstream 460230 16149736 ~ 16177066 (-)
AMCG00011272 ube2al,ube2a,ube2b,LOC105934920,LOC103029486,LOC103021436,LOC104955100 coding downstream 522337 16110270 ~ 16114959 (-)
AMCG00011264 sec24a,LOC102796029 coding downstream 612547 16004972 ~ 16024749 (-)
AMCG00011283 NA coding upstream 509 16664913 ~ 16699921 (-)
AMCG00011284 NA coding upstream 81193 16745597 ~ 16746212 (-)
AMCG00011282 NA coding upstream 89252 16753656 ~ 16764495 (-)
AMCG00011286 NA coding upstream 111947 16776351 ~ 16804290 (-)
AMCG00011292 kif3a coding upstream 245916 16910320 ~ 16920194 (-)
G105479 NA non-coding downstream 389995 16244696 ~ 16247301 (-)
G105473 vdac1,LOC106567523,LOC107557296 non-coding downstream 399611 16236128 ~ 16237685 (-)
G105454 zgc:56064,LOC102205414,LOC107684868,LOC107564119 non-coding downstream 495958 16139099 ~ 16141338 (-)
G105427 sar1b,LOC106940938,LOC107657201 non-coding downstream 602273 16032251 ~ 16035023 (-)
G105326 NA non-coding downstream 1068172 15535370 ~ 15569124 (-)
G105607 NA non-coding upstream 229556 16893960 ~ 16895074 (-)
G105701 NA non-coding upstream 645386 17309790 ~ 17312068 (-)
G105752 NA non-coding upstream 894998 17559402 ~ 17561795 (-)
G105761 LOC103029292,LOC108441031,LOC106604913,LOC108424167,LOC103354367 non-coding upstream 899765 17564169 ~ 17566963 (-)
G105774 NA non-coding upstream 1089923 17754327 ~ 17755758 (-)
AMCG00011271 LOC107562913 other downstream 539117 16043371 ~ 16098179 (-)
AMCG00011259 pcbd2,LOC107386701,LOC105890513,LOC106941140,LOC103129816 other downstream 663424 15963338 ~ 15973872 (-)
AMCG00011251 gfpt2,LOC106611946,LOC105024910,LOC108240504,LOC107375897 other downstream 1121621 15499534 ~ 15515675 (-)
G105290 LOC108429417 other downstream 1264117 15370402 ~ 15373179 (-)
G105050 NA other downstream 2568735 14067215 ~ 14068561 (-)
AMCG00011290 rbm27,LOC106567487 other upstream 279528 16943932 ~ 16961069 (-)
AMCG00011313 NA other upstream 1053222 17717626 ~ 17751099 (-)
G105770 NA other upstream 1086849 17751253 ~ 17751502 (-)
G105793 NA other upstream 1335264 17999668 ~ 18000445 (-)
AMCG00011316 LOC107664359,LOC107560145,LOC108427843,LOC107752026,LOC105007072,LOC103354679 other upstream 1516242 18180646 ~ 18191195 (-)

Expression


Co-expression Network