AMCG00011282


Basic Information

Item Value
gene id AMCG00011282
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 16753656 ~ 16764495 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00011282
ATGACGAGAGACTACGACCAAGTCACAGCTTTCCTGGGGGAGTGGGGCCGCTTCCAGGTGATGGTCTTCTCTCTGCTTTGCGCCAGCACGGTTCCCAATGGATTCAGCGCCTTTTCCGTGGTGTTCCTGGGGGACACGCCACCCCACCGATGCCTCATACCCGACAGTGTCAACCTCAGCGCTGAATGGAGAAATGCCTGCATCCCCGTGGAGCAGGTGGACGGGCAGGTGCGACGCAGCTCATGCAGGAGATACCGTCTGGACGTGGTCAGAAACCTGTCCGCTGTCCACCAGCGCCCGGGTGTGGACGTCAATTTTGATCTTGTGTGCAGCAATCAATGGAAAGAACCTCTCACCTCCACTGTGTACTTTCTGGGTGTACTTTTTGGGTCCTTCATCTCTGGTCAGCTCTCTGACAGGTTTGGAAGAAAACCCATTCTGTTTGTGACAATGGCAGTTCAGACCGTCTTCACATTCATTCAGGTGTTCTCTCCATCCTGGGAGGTATTCTGTATCATATTCTTCATTGTGGGACTGGGTCAAATCTCCAACTACGTGGCAGCATTTGTTTTGGGTACAGAAATACTGATCAAAAATGTGCGTGTCCTTTACTCTTCCCTGGGagtgtgtattttctttgcatttggaTACATGATGCTTCCTCTCATTGCCTTCTTTATACGAGACTGGAGGATGCTTCTCATTGCCTTATCTGTGCCCGGTCTTTTATACATCCCTCTGTGGTGGTTCATCCCCGAGTCCCCGCGGTGGCTGCTCTCTCAGGGCAGAGTGCAGGAGGCTGAGGCCATACTGCGAAAGGCTGCCAGAATGAACAAGGTCACCCCCCCTGATGGCGAAGAGAAAAAAACGAATAAAGAGGATAACCATAACGTCCTTGATCTTCTGAGAACAAGTAACATCCGCTACATTACAATCATATTGTTTCTTGTGTGggGTACTGTAAGTATGGGATACTTTGCTTTGTCGTTGAACACATCCCATCTACATGGAAATCCTTACCTCAACTGTTTTATCTCTGCTGCCATTGAAATCCCTGCCTACACAGTCACCTGGGCATTTCTGCAGTTTTTACCAAGAAGAGTGTGTGCTCCAGTTAGTATGATTCTTGGTGGAGGTGTACTTTTCTTCATTCAGCTTGTACCTCCAAGTTTACCCATTGTGTCAATTGCACTGGAGATGGCAGGAAAATTTGGAATGGCTATTGCAACAGCATTAATGTTTGCCTACACAGGAGAGCTCTATCCCACCGTGCTGAGAAACACTGCGGTGGGCTCCTGTACCATGGTGTCCAGAGTTGGCAGTGCCATTGCTCCCTACTTTATCCACCTGAGTATATTTTACAAGTACCTGCCCTACATTGTGTTGGGAGCTCTCACAGTCTCTGCTGCGCTACTCTCACTGTTACTACCGGAAAGCTTTGGATTGCCCATGCCTGAGAGCATTGGCCAGATGCAGAATATCAAGTGTTTGAAACTgagaaatacatcaaataaaacctCAGGCCATGAAGAAATAAGCACTCCTGTAGTCCTTAAAGAGGAGGCACTGTGACCGTGACATTTCAGCAAATAAGCTCTTCCTTTCAACTTCTGCCCAGCACTGTTGATATACAACTTTTGGTGCCAATATcttaattatctttaaaaaattatgaattaaagatTATGAAACACGTTTTAATATTTCAGAGTATGATATACACTTcatgatttgtaaaatgttctcCTCATTATTAATGGCAATACCCATATCGCACTCTTGGTGTGCATGTTGTCTAGCCAAGCTTCCAGGGATCCACTTAAACCTCAgtgtttccatttcaaacaGCAGCTTCCTGTCAGTCGAGTCTGTAGTATAGGCATAGACTATCTTTTGCCTGCATCAGCAGTTTATTATTAGGTTATTGTGCATCTCCCGGCATTGAATCATTGTGAGGTAGGGCTGCCAGTTATTTGATTGTTGTGCCAAAGTGTCAGTGTCTGAATGATCCAGCTCAGTCACAGTCTCGCTGACATTAAAACATCTGGACTGTCAAAATCCCCTCCAGCTGTATGGTTATGGTTATAAAGagtctttctctttttaaacctgaagagaagaaaaaaatactaattgacatgattttcaaaacaaactggGAAAGCAAAAAGGTTTGGTTCGATAAATCATTTCAGAGACCATCATGTGTAGAcactataacattttaatatcactggAGATTTGAGTATTTTTTCCCCTACAgttttataaatgaatatgtGTCACTTGACAAAATAAAGGCGAAATGGCCATCCAATTAGAACTAATTCAGGAAGACACCAGGCCAAGTAGCATAATAGTAAATAGTGTACTCACttattgtaaaaatgttatcaaatcCCAATGCTGCTATTATTCAAATTGTTATATTGATAGAAAAGCCCTTACCCTTTTATATGTTGCATCTGATCAATAGTCTCAGGGAGCGGCACTCCAAAACTTTCAGGTAAGAGAAGAGCAAGCACCCCTGCAATAATGGTGAGGCTTCCCATTAAGATGTAAGGCAGAAACTTGTCGAATTTTCCTGTAAAACACAAGTAGATGCTGTACACCAAGACAAGACAGTGCCTTtcagaaaattaataaacagtgtGTGGGGAAAAGCCTATCTTTCAGATTCAGAGGAATCctttttttaacttgtaattgtaagttgaattaatgcttaatttgaatttgtattgaattgtattactgcacttttgtaatgcctGTGTATCCtgcaagtcaccctggataagggtgtctgccaagaaataaataataaaaatataaaccctGTAAATGAGAAAGTCAGTGGAAGTGTCCCAGGATGGCTTACCCAGGAAGACAAAGTAAGGGGCACTGATGCTGCCTATTCTGGAAGCCATGGAACAGACTCCGACTGCCATGTTCCTCACTACAGTGGGGAAGAGTTCTGCGGTAAAGGCATAAACTATGGCAAATGCAGATGTAAATCCAAACTTCCCCAGCATCTCCATTGCAACACATAATGCTGTTAAATCTGttgaatacacataatttctTACCTTGTGGAATAAGCTGAATGAAGAGAAGCACTGTTCCACCTTGAACAAGCATGAAGAAGAGAGAAAGTCTCCTAGAGCAATTTTGAAGCAACAGCCAAGTAGCAATATAGGCTGGCACTTCAACTGCCCCAGAGGAGAAGCAGTTAAGGTAGATGTTTCCGTGTAAACTGGAAGTGTTCAGTGATAAGGCAAAGTACCCAATGGATAGTATCAtcCACACAAGGCAGGACAGAATCGTGATGCAGCAGATGTTTCCACTCCTCAGAAGGTCTAGGATGGTGTGCACATGTGTTTCTTCAGACTTATTGTCTTTAGGCTGCACAGGCTCAAATATGATGTCAGGGGGGGTGACCTTGTTCATT

Function

GO:

id name namespace
GO:0006810 transport biological_process
GO:0016020 membrane cellular_component
GO:0005215 transporter activity molecular_function

KEGG:

id description
K08202 SLC22A4_5, OCTN; MFS transporter, OCT family, solute carrier family 22 (organic cation transporter), member 4/5

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00011282 True 3451 mRNA 0.43 13 16753656 16764495

Neighbor

gene id symbol gene type direction distance location
AMCG00011284 NA coding downstream 7444 16745597 ~ 16746212 (-)
AMCG00011283 NA coding downstream 53735 16664913 ~ 16699921 (-)
AMCG00011281 NA coding downstream 89252 16637296 ~ 16664404 (-)
AMCG00011279 rapgef6 coding downstream 174064 16540657 ~ 16579592 (-)
AMCG00011273 NA coding downstream 554117 16198120 ~ 16199539 (-)
AMCG00011286 NA coding upstream 11856 16776351 ~ 16804290 (-)
AMCG00011292 kif3a coding upstream 145825 16910320 ~ 16920194 (-)
AMCG00011291 pou4f3,LOC106603866,LOC106567605 coding upstream 170011 16934506 ~ 16935842 (-)
AMCG00011294 NA coding upstream 214103 16978598 ~ 17004504 (-)
AMCG00011297 kctd16,LOC106603861 coding upstream 383520 17148015 ~ 17159586 (-)
G105553 NA non-coding downstream 28503 16655247 ~ 16725153 (-)
G105479 NA non-coding downstream 506355 16244696 ~ 16247301 (-)
G105473 vdac1,LOC106567523,LOC107557296 non-coding downstream 515971 16236128 ~ 16237685 (-)
G105454 zgc:56064,LOC102205414,LOC107684868,LOC107564119 non-coding downstream 612318 16139099 ~ 16141338 (-)
G105427 sar1b,LOC106940938,LOC107657201 non-coding downstream 718633 16032251 ~ 16035023 (-)
G105607 NA non-coding upstream 129465 16893960 ~ 16895074 (-)
G105701 NA non-coding upstream 545295 17309790 ~ 17312068 (-)
G105752 NA non-coding upstream 794907 17559402 ~ 17561795 (-)
G105761 LOC103029292,LOC108441031,LOC106604913,LOC108424167,LOC103354367 non-coding upstream 799674 17564169 ~ 17566963 (-)
G105774 NA non-coding upstream 989832 17754327 ~ 17755758 (-)
AMCG00011271 LOC107562913 other downstream 655477 16043371 ~ 16098179 (-)
AMCG00011259 pcbd2,LOC107386701,LOC105890513,LOC106941140,LOC103129816 other downstream 779784 15963338 ~ 15973872 (-)
AMCG00011251 gfpt2,LOC106611946,LOC105024910,LOC108240504,LOC107375897 other downstream 1237981 15499534 ~ 15515675 (-)
G105290 LOC108429417 other downstream 1380477 15370402 ~ 15373179 (-)
G105050 NA other downstream 2685095 14067215 ~ 14068561 (-)
AMCG00011290 rbm27,LOC106567487 other upstream 179437 16943932 ~ 16961069 (-)
AMCG00011313 NA other upstream 953131 17717626 ~ 17751099 (-)
G105770 NA other upstream 986758 17751253 ~ 17751502 (-)
G105793 NA other upstream 1235173 17999668 ~ 18000445 (-)
AMCG00011316 LOC107664359,LOC107560145,LOC108427843,LOC107752026,LOC105007072,LOC103354679 other upstream 1416151 18180646 ~ 18191195 (-)

Expression


Co-expression Network