AMCG00011283


Basic Information

Item Value
gene id AMCG00011283
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 16664913 ~ 16699921 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00011283
gtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgttttagttacacaaaacaaaaacacgtattaaattaattgtaattttacagAACTTAAACCAGTTAATTACTCTGGGCCACTTTTTTCAAACGTATAATGCAATGACACATACATGCAATTTTTAGAATGAGCACTACATGGAAATATACACCAATGGAAATATagtaaaattgtgaaaaatgtctACTCAAAAATGTCTTGATTTGTGGAAAGGACCACAAGTCTGCCGCCAGGGTATGTCATACACCAGATTGGCCTGCATGTCTGTTGACTGAACAGAAAATTCAAATGTAGaaggtaaaacatttaattgacagTTGTTTCACATTGCAGTACTTCAAAGAAATATTGTTCTCAATGGAAAGCCTTTCTTTTTATGTTATGACAAACCATGTCTTAATTAGCATATTCCAGTATGTTTCAGAATTCCCCATTAGCACAGTTCTTTAAACTTTGATTATAACTCATCGCACGCTGGGGGGGTTAACATATGTACAATTATTCATACTGTCTGTTTGTCCTTGATTTGTATCATTGCAGTTTGCACGGTTCTTCCTCTGTGCATAATTACTTGTATTTCTGTGATCATACTGGACGATGTGTATCCcctttatatttatacagtcAGGAAATAAAATCATTCAGTTATAACATGGCCTGTAAAAGACCGGAAGAGGCAGCTGCATGTTTCTGACTGTGAACCAGCTGAAAGGTCAGTCACATGATCTCTCTGGGAAAAGACAATTCAGTTAATATCAAAGCTGGCTTGTTGCACAGATAAATTACACACGTTTAAAATAAGTGCATTGTGTAAAAACACAAGTGTTGGATTATAACAAAGGAAAAGATTACgagcaaaaatgaaaaacatttacaaattgaATAGGAGGATGTGGTTTGCAGGTGATAGTTTGCACAACGAATATGATGAATTAGTCAGAGAAATTGGATTAGGGTTTCTTTATTCACCTGTGATTTGTGAAATGTTACACATGTGTAATAGTCCTTCCAGTAAGCATCTGTGTGGGAGTGAAACCGTTTCATTTTAACTTTGTGTTATAAAAGATTTGCAGGCATTGTGGTCATCCAAGTAAAATATAGTGTTTGTACCAAGACACaggaaactgaaaaagaaatctCAGCTGCAGATACACTACACAGTCGAAACTGGTAAAATGGTGCTACAGAATAAGATACAGTATGGAAACCGGATGCAAATCATCCCATCACCTTGTCCCGACCGCCTGTCACCTTCACATGAACTGATGGGATAATGTGGATATTAAAGCTACATGTATCGGTAAAGATATATaccaatataaaacaataacacaccCCTTACCAGTCGATATTCAATACTGCTGCTGAATTATACGGATCAAAGAAAACCCCTGGCATCCCCACGACAGCCCGGATTGACCAGCTCAGTATTACTCAGTGCTTCTGCTCTAATCTCCCAGATTGTCCCAGAGCTGCTGCAGTCCAGCCTGTGCTGCAGTCCTCCAGTCCTCCAGTCCTCCAGCCTCCATCTCCAGGCTTTCTGCTGCTGCAGCAAACTcaagcacagacacagagagatgctTGCCTTCCTGCTCGTTTCTGGGTCTATTTGGATTGTGCTAGAGATCAGTAACACGCTGATGGAGAAGATGCAGGCCCAGGAGATTCTGCGCAGTCTGCGGTTGCCGGAACTGGATGAGTTCAGTCAGTTCTTCAGTTCCCTCCCTGCATCCACTCTAGTGGGCATTGGAGCTCTCACAGCTGTCATAGCCTACTGGCTGACCACACGGCCCAAAGCCATGAAACCTCCTTGTGATCTCTCCCAGCAATCAAAGGAAGTCGAGCACAGTGATGGAGCGCACAGGTCTGTGCTGGGGGACAGTGCGAAGCTGCTGACGCATTATCATGACGATGCCAAGACAATGTACGAGGTGTTCCAGCGGGGGTTGCACATAGCTGGTGACGGGCCTTGTTTAGGCTCTAGGCAACCCAAACAGCCATATCAGTGGCTTTCATACAAGGAGTGGATTATTTCCGAGCTGGCCTGTTACACGTACTCTATGGTGGTTGTACCACTTTATGACACTTTGGGACCAGATGCAATTCGCTACATTATCAACACCGCTGAGATCTCCACAGTTATATGTGACAAACCAGAGAAAGCCCAGGTACTGCTCGAGAATGTGGAGAGACAGGAGACTCCCGGGCTCGAGACTGTTATCTTGATGGACCCCTTTGACATACCCCTGGTGGAGAGGGGACACAAATGCTTTAGGAAGAACACACCACAGAGTTCCTATGGAAACCCTAAAGGAGTGATGCTGACTCACGGGAATGTAGTTGCTGACTTTTCCGGCTTCCTTAAAGTGACTGAGAAAGTCATCTTTCCCAGACAGGATGATGTTCTCATCTCCTTCCTGCCTCTTGCTCACATGTTTGAAAGACTCATCCAGTCTGTAGTGTACTGCCATGGTGGGAGGATTGGTTTCTTCCAAGGAGACATCAGGCTTCTGTCAGATGATATGAAGGCACTTCGGCCCACAATCTTCCCTGTGGTGCCCAGGCTGCTTAACAGAATGTATGACAAGATCTTTAGTCAGGCCAATAACCCTGTGAAGCGCTGGCTGCTGGATTTTGCCGCGAAGAGAAAGAGTGCTGAAGTTCTCAGTGGTGTCATACGGAGCGACAGTGTGTGGGATAAGATATTCTTTAGAAAAATACAGGATAGTCTGGGTGGGAGGGTGAGGATGATAGTGACAGGGGCCGCTCCGGCATCTCCCACCGTCCTTGGTTTCCTGCGAGCCGCTCTGGGCTGTCAGGTCTACGAGGGTTATGGGCAAACCGAGTGTACTGCTGGGTGTACTTTCACCACGCCTGGAGACTGGACGTCAGGTCACGTTGGTGCACCGCTCCCCTCTAACTTGATTAAGCTGGTAGATGCAACAGACATGAATTATTTTGCTTcaaaaggagagggagagGTGTGTGTAAAGGGGCCGAACGTGTTTAAGGGCTACCTCAAAGACCAGGAGAAAACCGCGGAGGCTCTCGATGGAGATGGATGGCTGCACACTGGGGACATTGGGAAGTGGTTGCCTaatggtacattgaaaataattgacCGCAAGAAGCATATCTTCAAACTGGCTCAGGGAGAGTATATTGCCCCAGAGAAAATTGAGAACATCTACATCCGCAGTGAACCTGTGTCACAGTTGTACGTCCACGGGGACAGCTTGCAGTCCTGCCTTGTTGGGATAGTTGTACCTGATCCTGAAGAGGTGAAGAAAGCAATAATGGAGGATATGGTGCGCTTGGGAAAAGCAAGTGGCCTACATTCGTTTGAACAGGTCAAGGATATCTACATCCACAGCGAAATGTTTTCAATACAGAACGGACTCCTGACACCGACGTTAAAGGCAAAGAGACCAGAACTGAGAGAGTTCTTTAAGGAGAAAATAGAGCAGCTGTACGCCAACATCTCGATGAGGTGTAACAGTATCTACGTAAAACTTGAAAACAAAATGGTAAAGAAGCAGAAACTGCGCGACATGGCAGGGAATCAGTCGCCCCGCCTGGGCAGATCCTCCTCCAGCAGAGGGCTGTGGTCCACACCTGCCCCTCAGAGGACAAAGCGACAGAGGGTTTTCCAAGTGAACCTGCCCGATGCGAAGGGCAGCCTACACCTCACCCCCATCAACGAGTCCCCCTCATCTCCGCAGGAATTCATCGTGCAAACTGACAAACCCAGAGGGCTGGCAAGCGTCTCAGTGCAGAAAGAGTCGACTTACAGCAGCTGTGCAAGTGGCTCTGTAAATAGCGACAGTACCTCAGAAATGATTCTGCCATCTGGAGTGTCCACCTTTTTCCTTGCTTGCATGGATTCTGATTTGCCTGACATGCCATCCTTGTCAGACTCTTCAGAGAGCAGCCTCTCTTCACCAGAAGTCTTTCGTAAAAGTGACTGCCTTGAAGAGGCATTTGACTTCCTTGATGAAGATGAATATACCTGTGAAGAGATCAGGAACTCTACCCTTCTTGACACCAGTCATGCGGTTGATATAAATATGAAGCAGCCCCTCAACCTGTCTGACATCTTAGGAAAAATTGTCACAAATTTTTATGTGACGCAAGAGATAACTCGAGAATCCCGAATAACTGTTGAAGTTCCTATCCCATTTAAACAACCCAAAAAGAGACAAGCATTCCGACCTGTCAAGTGTCGAAAGAAGGTCACTTTCAAGGAATCTGTAATAATGGAAAAGACTTTCCAAAGCCCTGGAATGAGCTGTGACACTAAAGTTACAACCAAGCAAGTCATTGAAAAGGTGATGTCTGTTTGTGAACCTGAGAAGATAGCGGCTTCTGAAGGACAGAAGAAGGACAGCTGGCAGACTGTTCCAGAGAAGGCAAATgatggagaggagagaagagaagcTGAGAAAAGAGAGAAGGGAAGAAGCACAAGCAGACATTTTCCCAGTTCCTTAAAGGCAGCTGAATATGTGAGGCCCTCATCAAAGTCTGAACCTCACAGTGTAAATCTTCCAGAGCGTCAAAGCAAATACTTCTCCAAGAGACACAGTCCATCCCCTAGAGAAATCAACGGTGTGTCAGTAAATGAAGAGGAATACATGACCCGAgtACTCATCTGCCTTACAGATATTTCCCACCAGGTCCAGATACCAAAGGCTTTATTCATAAATGTGAAAGAATCGATCTGAATGGAATGAAATTTAAAGATTAGCACTTTGGATGGATATGatggtttagtttttgttgtatttagcTCACATGTAAGTTCTTGTTTAtctgttaaaaatgtgtaaaatatggatgtaaatgtatataattaataacaatggaAATGAATGTAAATAGAATTGATACATGTTGAAAAAAGGGACAAATCTGAGTGTAAACCTTGAATAAATtgttgc

Function

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0003824 catalytic activity molecular_function

KEGG:

id description
K01897 ACSL, fadD; long-chain acyl-CoA synthetase

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00011283 True 4982 mRNA 0.44 30 16664913 16699921

Neighbor

gene id symbol gene type direction distance location
AMCG00011281 NA coding downstream 509 16637296 ~ 16664404 (-)
AMCG00011279 rapgef6 coding downstream 85321 16540657 ~ 16579592 (-)
AMCG00011273 NA coding downstream 465374 16198120 ~ 16199539 (-)
AMCG00011274 tcf7 coding downstream 487847 16149736 ~ 16177066 (-)
AMCG00011272 ube2al,ube2a,ube2b,LOC105934920,LOC103029486,LOC103021436,LOC104955100 coding downstream 549954 16110270 ~ 16114959 (-)
AMCG00011284 NA coding upstream 45676 16745597 ~ 16746212 (-)
AMCG00011282 NA coding upstream 53735 16753656 ~ 16764495 (-)
AMCG00011286 NA coding upstream 76430 16776351 ~ 16804290 (-)
AMCG00011292 kif3a coding upstream 210399 16910320 ~ 16920194 (-)
AMCG00011291 pou4f3,LOC106603866,LOC106567605 coding upstream 234585 16934506 ~ 16935842 (-)
G105479 NA non-coding downstream 417612 16244696 ~ 16247301 (-)
G105473 vdac1,LOC106567523,LOC107557296 non-coding downstream 427228 16236128 ~ 16237685 (-)
G105454 zgc:56064,LOC102205414,LOC107684868,LOC107564119 non-coding downstream 523575 16139099 ~ 16141338 (-)
G105427 sar1b,LOC106940938,LOC107657201 non-coding downstream 629890 16032251 ~ 16035023 (-)
G105326 NA non-coding downstream 1095789 15535370 ~ 15569124 (-)
G105607 NA non-coding upstream 194039 16893960 ~ 16895074 (-)
G105701 NA non-coding upstream 609869 17309790 ~ 17312068 (-)
G105752 NA non-coding upstream 859481 17559402 ~ 17561795 (-)
G105761 LOC103029292,LOC108441031,LOC106604913,LOC108424167,LOC103354367 non-coding upstream 864248 17564169 ~ 17566963 (-)
G105774 NA non-coding upstream 1054406 17754327 ~ 17755758 (-)
AMCG00011271 LOC107562913 other downstream 566734 16043371 ~ 16098179 (-)
AMCG00011259 pcbd2,LOC107386701,LOC105890513,LOC106941140,LOC103129816 other downstream 691041 15963338 ~ 15973872 (-)
AMCG00011251 gfpt2,LOC106611946,LOC105024910,LOC108240504,LOC107375897 other downstream 1149238 15499534 ~ 15515675 (-)
G105290 LOC108429417 other downstream 1291734 15370402 ~ 15373179 (-)
G105050 NA other downstream 2596352 14067215 ~ 14068561 (-)
AMCG00011290 rbm27,LOC106567487 other upstream 244011 16943932 ~ 16961069 (-)
AMCG00011313 NA other upstream 1017705 17717626 ~ 17751099 (-)
G105770 NA other upstream 1051332 17751253 ~ 17751502 (-)
G105793 NA other upstream 1299747 17999668 ~ 18000445 (-)
AMCG00011316 LOC107664359,LOC107560145,LOC108427843,LOC107752026,LOC105007072,LOC103354679 other upstream 1480725 18180646 ~ 18191195 (-)

Expression


Co-expression Network