AMCG00011286


Basic Information

Item Value
gene id AMCG00011286
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 16776351 ~ 16804290 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00011286
GTGAGCAGGGCCGTCTTTCAGACAGTGTTGCCTAGCAGCTATAGGCTCAGGACCTGCTTTCTTCCAGTCTCCAGCCTGACTTGCGGATTATTTTGACACAGACATGCCCCAGACTGTAACTTTAAGCGGACCCTCGCCCTGGGGTTTCAGGCTTGTGGGTGGAAGGGATTTTAGTACACCTCTCACAATTTCAAGGATTACACCTGGAAGCAAAGCCGCACAGGCAGACCTTTGTGCGGGCGATACCATCCTCACTATAAATGGAGACAGTACGGAGAGCATGACACACATGGAGGCTCAAAACAGGATCAAAGCATGCACTGACCAGCTTGTTTTATCCATCCAGAGgtcAGAAACAAAGATCTGGTCCCCAACAGTTATAGACGATGGCAAAACAAATCCTTATAAGGTTAATCTGGAGTCTGAGCAGCAGgATTTTAGACCCATTGGAAGTGGATATAACAGAAAACCGGCCCAATATGTTCCGGAAGTTCCTCAGAATAATGGCAATTCTAAatcaaatatacagtataataatcCAGTTGGTCTGTACACAAATAACAATGTGGAAACCACTTTACCAAAGCAAATGACTGCTCTCAACCTGGGTTCCCCTTATAGTCCTGAGCCCCCCGTCCAGTCACCAAGCAGCAAGAATGGCTTCAACACTGAGTCGGATGTCTATAAGATGCTTCAGGATTATGAAGCGCCATCCTCTGAGCCTAAACAATCGGGGTCATTCAGATACTTACAGGGGATACTAGAGGCCGAGGACAGTGGTGAAAGGCCTGGAGTGAAGAGTGTGAAATCCCCAGTCAAATCTCCCGTCCCGAAACTTGGGAGCCCCCTACCCAGCTTGCAGAAGCTCCCCCAGTGCACCAGATGTGGAAATGGCATAGTTGGGACGATCGTGAAAGCAAGAGACAAGCTATACCACCCGGAGTGCTTCATGTGTGACGACTGCGGGCTGAACCTGAAGCAGAGAGGGTATTTCTTCATCGAGGAGCACCTGTACTGCGAGACCCATGCCAAGGCCCGGGTCCAGCCACCAGAGGGGTATGATGTCGTGGCAGTCTACCCCAACTCCAAAGTGGAACTAGTCTAAGTCTGCACATTGAAagtatgtgttgtttttatcaaTTTTTTTGTCCTATTCTCATGGGGATGAAAAGCTTTCATGCACTGCATGTTAGAATGATCAGTTGTAACTTGGTGAAATATTAATTGTCTTCAAGGAGTATATTTTAGTTTCATAGCTTctcatacaaatattattcaGAACTTACCatagtgtttcttttcttttcttttttaatacaaaacagtatTGTATGTTTTACACCTACAGACATTATTAGGTCATTTCAATCCATGGTTCAAGTcaactttattttctgtcaatAGCACTTTCACTATATTTCAGTAAACaagttcatttttttccccatgataTCAATATCACTCCAAGTCTCACAAAATATATCTAAGTTGTTTCACCTTCTGTAAAAAAGAGTACATAACACAACATAAAGACTCCATCCTAAATTCTTCAATGTACATATCTGATGCCCTTCTTGTGTCACATCTAAATATCTCAGTCTTTCTGCAACTATTAAATAGCTGGAAGAAGCTGGGACATGTGATAAAaagtttaataagaaatatgGAATATATTGAAACCATGAGCATGTGGAAATGGTCTCCATCTCTTTCATTTTTTGCGTATTCTGTAGGTACAATATTTTTGGTTTATCTTCTAGATGTTTAAGATTATGATTTTtaagagaaaaactaaataatcaTAACAGCTAATATTTCACAAAGAGAATATTCCATGTATCGTAAGCTGGTTATGACCAAAATGTCTCAcgtgaaatgtatttgtgtatccgttttcctttttttttttttttttgttaatcagcttgctttaaatatttccatGTGTTAATGATTGTACtaagtattaataatacttaTGAAACTGAatctcaattcaatttaaacctgaaagtttgtaaaatattttaaaagatgtttatttatacaacaaaaaaaacacagcaaacaacAGTCAAATATTAAATTTGGAATAATGGTCTGCAGAACTAATTCTTACAAGATTGTAATTCTTAGAAGAGAAGAACAGTTCGAAAGTAATCCACACTGTTACTGTAGCAATGCTAAAATACAGTACTATGTGGTAGGTGGTGATTCAGTAAAATGTTAGTTTCCATCTTTATTAGTagtgtacatattttttttctttgtggaattgtattttttaagtgttttaacaaaaataattattaccttttgtctttttacttGAGTGTCATAACATGCTAACTGACCACGAATTATTCACAGCAAAcgtttttaacttattttctaaTCTTTAGTTTTGGTCCTTCAATTCATGTGgttaagtataaataaaataaaataaaagca

Function

GO:

id name namespace
GO:0046872 metal ion binding molecular_function

KEGG:

id description
K23353 PDLIM1_2_3_4; PDZ and LIM domain protein 1/2/3/4

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00011286 True 2454 mRNA 0.38 7 16776351 16804290

Neighbor

gene id symbol gene type direction distance location
AMCG00011282 NA coding downstream 11856 16753656 ~ 16764495 (-)
AMCG00011284 NA coding downstream 30139 16745597 ~ 16746212 (-)
AMCG00011283 NA coding downstream 76430 16664913 ~ 16699921 (-)
AMCG00011281 NA coding downstream 111947 16637296 ~ 16664404 (-)
AMCG00011279 rapgef6 coding downstream 196759 16540657 ~ 16579592 (-)
AMCG00011292 kif3a coding upstream 106030 16910320 ~ 16920194 (-)
AMCG00011291 pou4f3,LOC106603866,LOC106567605 coding upstream 130216 16934506 ~ 16935842 (-)
AMCG00011294 NA coding upstream 174308 16978598 ~ 17004504 (-)
AMCG00011297 kctd16,LOC106603861 coding upstream 343725 17148015 ~ 17159586 (-)
AMCG00011299 kctd16,LOC106603861 coding upstream 369407 17173697 ~ 17203530 (-)
G105553 NA non-coding downstream 51198 16655247 ~ 16725153 (-)
G105479 NA non-coding downstream 529050 16244696 ~ 16247301 (-)
G105473 vdac1,LOC106567523,LOC107557296 non-coding downstream 538666 16236128 ~ 16237685 (-)
G105454 zgc:56064,LOC102205414,LOC107684868,LOC107564119 non-coding downstream 635013 16139099 ~ 16141338 (-)
G105427 sar1b,LOC106940938,LOC107657201 non-coding downstream 741328 16032251 ~ 16035023 (-)
G105607 NA non-coding upstream 89670 16893960 ~ 16895074 (-)
G105701 NA non-coding upstream 505500 17309790 ~ 17312068 (-)
G105752 NA non-coding upstream 755112 17559402 ~ 17561795 (-)
G105761 LOC103029292,LOC108441031,LOC106604913,LOC108424167,LOC103354367 non-coding upstream 759879 17564169 ~ 17566963 (-)
G105774 NA non-coding upstream 950037 17754327 ~ 17755758 (-)
AMCG00011271 LOC107562913 other downstream 678172 16043371 ~ 16098179 (-)
AMCG00011259 pcbd2,LOC107386701,LOC105890513,LOC106941140,LOC103129816 other downstream 802479 15963338 ~ 15973872 (-)
AMCG00011251 gfpt2,LOC106611946,LOC105024910,LOC108240504,LOC107375897 other downstream 1260676 15499534 ~ 15515675 (-)
G105290 LOC108429417 other downstream 1403172 15370402 ~ 15373179 (-)
G105050 NA other downstream 2707790 14067215 ~ 14068561 (-)
AMCG00011290 rbm27,LOC106567487 other upstream 139642 16943932 ~ 16961069 (-)
AMCG00011313 NA other upstream 913336 17717626 ~ 17751099 (-)
G105770 NA other upstream 946963 17751253 ~ 17751502 (-)
G105793 NA other upstream 1195378 17999668 ~ 18000445 (-)
AMCG00011316 LOC107664359,LOC107560145,LOC108427843,LOC107752026,LOC105007072,LOC103354679 other upstream 1376356 18180646 ~ 18191195 (-)

Expression


Co-expression Network