AMCG00011293 (plac8l1)


Basic Information

Item Value
gene id AMCG00011293
gene name plac8l1
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 16978492 ~ 16982241 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00011293
ATGGCAGACCTTCCTATCGTCACTCAGCCGGGCCTGGGCGTCACCACGACCACTGTGACGACCATCACTCAGACGGGGGGTGACTGGAGCACGGGCCTCTTCAATGTGTGCAGCGACAAGACCATCTTGTCCCCCTGCTGTTTGGACCTTAGCTTGGCGAACCAGTACGGCGAGTGCCTGTTCTTACCGCTGCTCCCGGGTTCCACGTTTGCCATGCGCGTAGGGATTAGGGAAAGATACAAACTACGGGGCAGTGTCTGTGGGGACTGGGCCGCAGTGTACTTTTGCTATCCCTTAGCAGTCTGCCAGATGATCCGAGAGTTAAAGAGAAGAATAAGGACACAGATCTACCACGTTTCAACAACCCTTGAGTGCTCCTGA
>TU132132
GGTTTCTTCCAAATTCGGTCACAGAAGTGTTTGCCTTCAGTCGTACAGCTTCAATGGCAGTGCAGTTATGACCCCAGTGATcaaGCTTAATTTGAGAGACTCCGATGCCTCTTGTATCTGACTGACTTGGTCCCTGAATATACGGGGACGATGGCAGACCTTCCTATCGTCACTCAGCCGGGCCTGGGCGTCACCACGACCACTGTGACGACCATCACTCAGACGGGGGGTGACTGGAGCACGGGCCTCTTCAATGTGTGCAGCGACAAGACCATCTgtGTTGTGGGTGCAGTGTCCCCCTGCTGTTTGGACCTTAGCTTGGCGAACCAGTACGGCGAGTGCCTGTTCTTACCGCTGCTCCCGGGTTCCACGTTTGCCATGCGCGTAGGGATTAGGGAAAGATACAAACTACGGGGCAGTGTCTGTGGGGACTGGGCCGCAGTGTACTTTTGCTATCCCTTAGCAGTCTGCCAGATGATCCGAGAGTTAAAGAGAAGAATAAGGACACAGATCTACCACGTTTCAACAACCCTTGAGTGCTCCTGATTCTCCTGGTCCATCAGACAGCTCACCTTTTCCCTTTCAATTTAGcttattacagaaaatgaaatctAATTTTCTTTGAAATCTCTGTGATGTATTCATAATCAGGTACAGAGTATGGGTGGTGATAGAATCCATTCAGATCTTGCTTAATTGTgacaaaacagtttaatcagTATTTATACACTTATGTTTTATGAATGCAGCATCAGATGTTTAGGAGCAGTAGACAACATGGCTGAGAAattgaaaacatgcaaacatatttagttttattttctgaaattaaaaataaaaactgctgaCCTGTCCATACCTTGTCCAGTATGCACTTGGTAACAAACTCCTTTAAATCTCCctccatattaaaaaacattttctcaaatGTACAAAAGTTTCATCTCTTCTAGACATTTCATTTGGAGAAAATCCTCCCCCCCATagcatttcataaatatttcacattcaacTTTCAATGACAAAGGATGGAATTTCTCATGGAGATCTATATTACAAGTGTATATTTACATAGtcttttctattctattctgtGGCATTTTGACATTTAAGAAGGCTGACAACATATTTAACTTAGACATTTTACTCAGATGAAGCCAGTGTGAAGTATGAACTGTTGAAACAATATTCTGCTTGTTGTCTGTGCTTATCAAAAATATTTAAGTTACTGCTATTACTTATTAACTTGGCAAGTTAACATTAGTATTGCTAGTGTCACTTTTGACTTCCTCATCACTTTCCACATACCCCACAATAGCtcacattttctcttttgatttcagtgttagacttgcatgcatttaaatttatttcTTGGTACTTCTGGACAGTTTTGACACACTGATTGTTACgcattcaacaaaacaaattctaGTATTcctttgttaattttttttaacattattgcAGTATCataagaataaaatgtattttaatgtaatctattgcaaTATGTTGGACTTGTCGTCATGAGTTTAAGAAACCCATCTGTTAAAGtgtgcattttacaaatgtacagcTTTGTTATGATGACCACAGTATGATACATATTAGCATTCATAAAtggcattcatgtttttaatgattgttgGTGTATATTTGTGCACTGAGTGATATGGTTCAAAGTGCAGTAAAAGGATAAGGAGTTTAGGATCATCCTAGCCCTTCTTTGAAATAGTCCAGTTACATCAAAGACTCTACCTCCTGGTAAGGCAGAAACCTCACAAATAAGGTGCATTTTAAGTGCATGGAAGAATAACTAGGAtcctaaatataaataataatgtaaatgtccAAATGTATACTTGAGtcacagaaatacacattttcagttttccatttaaatagaTATTATGGCTTGCAAGGCACTAAAACAAACTGTTCACTGACTGTTTTCCCCACCAGATTTTGCCATGTCCATGCACTGGGAAGGGTAGCGTAGATTACGTTTACAATGAGCTTACAAATGTCCAGATTAATgatgatgtattttaaactttggTGTACAGCCATCGTTTACAATGGAAAAATACCCAGTGTGAAAATATAATGCTAAATTATACATTCAAAGTAGGCACTGTGGgctgcatttgaaatattagGCAATCTGTATAATGTGAAAGGTATTAGGCAAGAGACTCTGCTATCACATAGCGTACAGTCcaaaatcagcatctctacccAGGTCCACCACCTCCAGCTTAGAGATGTATAGTAACAATTACGCTTCTAGTGAGAGGGGATGTTCACTCCAACAGGGGTGCTGACTGGACAGAATCTGGTATGTGCAGACTGGAGGTAGAGTTCACTTCCTTTAATGCTGTAAAAACATGGGCTGGCCCAAGCCCAGCTTACTCTATATCAGTATTTTGCCCCACATCATAGTTTAGGGATTCCTCCGTTTGTAAACCAGTGGCAGGGATTTCATGGCCCAGTTCACACAGACTTTGATGACTATAGTAGTGCAGTTGTGTTTAACAGTGATAAacatcaaaacatattttaagtgttttggaCACCCGTTTACTATATTGAAAAAGGGTCCTTCTGTGTCAAACTATTTCACAAACTGAGAACAAATATCTTAAAAGGTGCAGATCAGTCAGCTCTGTTTCTCTAGAAATTCCAAGATGTTACTTTGGAAGAGCCCGGTTTTCCCACTCTTCTCTTGGGTGACCAGTAGCCTGCCTTCTGGTCGTGTTTTCTGTACCTGGACACAGTCTCCTTCCTTCAGGTGCAGTTCAGCATCACTCTGAGCTGTATAGGGCACTGCC

Function

symbol description
plac8l1 Is expressed in blood cell and vascular endothelium. Orthologous to human PLAC8L1 (PLAC8 like 1).

NR:

description
PREDICTED: PLAC8-like protein 1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00011293 False 381 mRNA 0.56 3 16978767 16979953
TU132132 True 2834 TUCP 0.39 4 16978492 16982241

Neighbor

gene id symbol gene type direction distance location
AMCG00011288 lars,LOC102775971 coding upstream 1032 16962316 ~ 16977460 (+)
AMCG00011287 rad50,LOC107684216 coding upstream 83567 16865367 ~ 16894925 (+)
AMCG00011289 p4ha2,LOC102786823 coding upstream 135796 16827176 ~ 16842696 (+)
AMCG00011285 NA coding upstream 222713 16748231 ~ 16755779 (+)
AMCG00011280 NA coding upstream 265716 16706327 ~ 16712776 (+)
AMCG00011295 NA coding downstream 24213 17006454 ~ 17008286 (+)
AMCG00011296 NA coding downstream 27067 17009308 ~ 17019306 (+)
AMCG00011298 yipf5,LOC107713174,LOC102777143 coding downstream 237447 17219688 ~ 17222519 (+)
AMCG00011302 NA coding downstream 277774 17260015 ~ 17261217 (+)
AMCG00011300 LOC105025958 coding downstream 313302 17295543 ~ 17307824 (+)
G105538 NA non-coding upstream 253339 16724688 ~ 16725153 (+)
G105466 NA non-coding upstream 778193 16200049 ~ 16200299 (+)
G105448 NA non-coding upstream 845505 16132758 ~ 16132987 (+)
G105438 NA non-coding upstream 911050 16067233 ~ 16067442 (+)
G105436 NA non-coding upstream 914743 16062914 ~ 16063749 (+)
G105684 NA non-coding downstream 327518 17309759 ~ 17312068 (+)
G105715 NA non-coding downstream 396379 17378620 ~ 17378860 (+)
G105756 NA non-coding downstream 752749 17734990 ~ 17742387 (+)
G105769 NA non-coding downstream 769009 17751250 ~ 17751484 (+)
G105776 phykpl,LOC100691570 non-coding downstream 783650 17765891 ~ 17768221 (+)
AMCG00011268 NA other upstream 868111 16105586 ~ 16110381 (+)
G105373 cssa04h5orf24,pcbd2,LOC105890513,LOC100699409 other upstream 994413 15963340 ~ 15984079 (+)
AMCG00011255 LOC106603967,LOC105011194,LOC108410970 other upstream 1105003 15863032 ~ 15873489 (+)
AMCG00011252 NA other upstream 1122708 15853764 ~ 15855784 (+)
AMCG00011253 NA other upstream 1126103 15850646 ~ 15852389 (+)
G105778 LOC105024433,LOC107752029,LOC107743918,LOC106604409 other downstream 801922 17784163 ~ 17788050 (+)
AMCG00011328 NA other downstream 2125032 19107273 ~ 19117369 (+)
G105916 NA other downstream 2239814 19222055 ~ 19222421 (+)
G106139 LOC108275110 other downstream 3112988 20095229 ~ 20162966 (+)
AMCG00011365 LOC108438827,LOC108243066,LOC107376386 other downstream 3313770 20296011 ~ 20339325 (+)

Expression


Co-expression Network