AMCG00011294


Basic Information

Item Value
gene id AMCG00011294
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 16978598 ~ 17004504 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00011294
ATGGAGGACTTGGCCCTGCTGGATCTACTGGAGTGCCCTTTGTGCTTCGAAAGACTCGATGTTTCAGCCAAAGTGTTACCGTGCCAGCACACATTCTGTAAGCCTTGCCTACAAAGGATGGTGTACTCCAAACCGGGGCTGCGGTGCCCCGAGTGCCGGACTCCGATATCTTGTGGGATTGAGGAGCTGCCTGCCAACGTCCTCCTGGTTCGTCTTCTGGATGGAATGCGACAGGGCTTCCAGAATGGAACGAAGGCGGGCACTTCCCAGAGATCTTTGCTCTCCCTGGCACGGAATCAGTCCTTGCGGAGAGGCAGAGATTCCAGCAGTTCCCAGTCCTCCCAGCGTAGGCTGACACTAAGTCGTCGGAGCACACTAGATGGGGCAAGTATCTCTGGATTCAGTCTCTCTGTGCCATGTGCCCGGGCTTTGTATCATTACAGAGGTACCAGCCCCGGAGAGCTGACTGTAAAACCAGGAGATCTCATCATCCTGAGGCAAAAAGTTGATGATGATTGGTACCACGGAGAAGCCAATGGCAACAGTGGTCTTGTCCCTGCCAGCTTTGTCCAAGTCATCCATCCGCTGGCCCAGACACTGCACCTCAGACCCCCTTCTGACTCTGAGGACAAGGATGAAAATAAGAACAACCTGATGTCCCTAAAGactAATTCTGCTGCTGTGAGGCTTACAGGGAAGGTGAATAGCTCCCCGGAAAGCCGCAGCAATTTGGGGAACAGCACAGCCACTTTGGTGGTTTGCCACAGGCTGGGCGACAGCAGCCCACGGAGCCCCAGACAGACTTCAGTGACCAGCACCTTGAATCGACTCAACAGGCAAGCCCTGAACCCCTCGGTGGAGCGGCCATCCCTGGAGATCAGCACCCCTGCCTTCACCAGCTCCGGCAACCCCGCTGTCGTGGCACAGCCGAGCGAGCACGTCTCCGAGCGCTCTCCGGCCGCCCTGGCTCAGATGCTTAGTGTTCCTGCAGAGAGAACAGTCGCCACAGAGCCTTCACCAGCCATCGCCATGGCTCTTATTAACCCGCAGTCCCATGCCATGTCTGTAGAGAACAAATACTCACGCCAGCAAGTCTCCATCAGTGTATGTGCCACCCTGTACTCCTACACCCCCCGCCGCCCGGAGGAGCTGGAGCTCCGCAAGGGAGAGATGGTGGGAGTTTATGGGAAGTACAAGGAGGGCTGGCTCAGAGGCCTCTCCCTGAGAACGGGCAAAATTGGCATCCTCCCGGGTAACTATGTCACCCCGGTGCTGAGAACGTCGGCCAGGTTCTTTGATCCCCAGTTGGCCCCTGCCGCCCCTGCCGTGTCAGGGAAGAGGCCCCTGTCATCCGCACCGCCGGCTGCAGTGCTTGCCCTGGATAGAGCTGCTCCAAACGGGACGACGCGGCCAGTCAGCCAGGTGCACTCTGTTGCCATGGCAGCCCCGGTGATGTCAGCCGGCGCAGCCAGAGCGGCAGCCCAGCAGGAGGGGGCTCTAGGGAGAGGCTCGGTGCGACGAGCCTTCGCTGCTCACAGGGGGCCGTCGCTGCCGAGTAATGGCTCTGTACGTCAGGCTTCCTCAGCTGTTATCCGACCCCAGCAGCCTCAGCCCTGCGGGACCACAGCACAGACTCACAGCATCAGCCCTGCACCTGTTACAGCTGGAGTGAAGCAGAACCAACCCACCCACTCTGCCAGGCCTCTGTGCTGGGTTACTGAGGCCACAGCGCCCTCTGCTggaaacacactgacactggacACCAGAGACACTGCTGCCAAAGAAGCACCTAGTAAAGCACCGCCAGGGCCTCCGCAGTCCATCTTGGTTAAGCCAGACTCCtacaaaagtatttttgaaaagAGCAGCTCTCAGCCACCAGCAGCACAGAAGAGCCCCACCCCAAGGCCGGGCCCGTCCGTGCAGGAGCCCCGGGGCAGCCAGGCCACTGTCTACCAGAGCAGGGGGGCAGTAGGCACAGATGCTAAGATTGTAACACTCAAGAAGGGCAGCTCACTGGACATCTCTAGTCCAGACTTCCCTCCACAAGGCCAGAAGCCATCTTCCAGTGCCAACAGATACAGGGTGGCAGTGCCCTATACAGCTCAGAGTGATGCTGAACTGCACCTGAAGGAAGGAGACTGTGTCCAGGTACAGAAAACACGACCAGAAGGCAGGCTACTGGTCACCCAAGAGAAGAGTGGGAAAACCGGGCTCTTCCAAAGTAACATCTTGGAATTTCTAGAGAAACAGAGCTGACTGATCTGCACCTTTTAAGATATTTGTTCTCAGTTTGTGAAATAGTTTGACACAGAAGGACCCTTTTTCAATATAGTAAACGGGTGtccaaaacacttaaaatatgttttgatgtTTATCACTGTTAAACACAACTGCACTACTATAGTCATCAAAGTCTGTGTGAACTGGGCCATGAAATCCCTGCCACTGGTTTACAAACGGAGGAATCCCTAAACTATGATGTGGGGCAAAATACTGATATAGAGTAAGCTGGGCTTGGGCCAGCCCATGTTTTTACAGCATTAAAGGAAGTGAACTCTACCTCCAGTCTGCACATACCAGATTCTGTCCAGTCAGCACCCCTGTTGGAGTGAACATCCCCTCTCACTAGAAGCGTAATTGTTACTATACATCTCTAAGCTGGAGGTGGTGGACCTgggtagagatgctgattttgGACTGTACGCTATGTGATAGCAGAGTCTCTTGCCTAATACCTTTCACATTATACAGATTGCctaatatttcaaatgcagcCCACAGTGCCTACTTTGAATGTATAATTTAGCATTATATTTTCACACTGGGTATTTTTCCATTGTAAACGATGGCTGTACAccaaagtttaaaatacatcatcATTAATCTGGACATTTGTAAGCTCATTGTAAACGTAATCTACGCTACCCTTCCCAGTGCATGGACATGGCAAAATCTGGTGGGGAAAACAGTCAGTGAACAGTTTGTTTTAGTGCCTTGCAAGCCATAATAtctatttaaatggaaaactgaaaatgtgtatttctgtgaCTCAAGTATACATTTggacatttacattattatttatatttaggaTCCTAGTTATTCTTCCATGCACTTAAAATGCACCTTATTTGTGAGGTTTCTGCCTTACCAGGAGGTAGAGTCTTTGATGTAACTGGACTATTTCAAAGAAGGGCTAGGATGATCCTAAACTCCTTATCCTTTTACTGCACTTTGAACCATATCACTCAGTGCACAAATATACACcaacaatcattaaaaacatgaatgccaTTTATGAATGCTAATATGTATCATACTGTGGTCATCATAACAAAgctgtacatttgtaaaatgcacaCTTTAACAGATGGGTTTCTTAAACTCATGACGACAAGTCCAACATAttgcaatagattacattaaaatacattttattcttatGATACTgcaataatgttaaaaaaaattaacaaaggAATACtagaatttgttttgttgaatgcGTAACAATCAGTGTGTCAAAACTGTCCAGAAGTACCAAgaaataaatttaaatgcatgcaagtctaacactgaaatcaaaagagaaaatgtgaGCTATTGTGGGGTATGTGGAAAGTGATGAGGAAGTCAAAAGTGACACTAGCAATACTAATGTTAACTTGCCAAGTTAATAAGTAATAGCAGTAACTTAAATATTTTTGATAAGCACAGACAACAAGCAGAATATTGTTTCAACAGTTCATACTTCACACTGGCTTCATCTGAGTAAAATGTCTAAGTTAAATATGTTGTCAGCCTTCTTAAATGTCAAAATGCCacagaatagaatagaaaagaCTATGTAAATATACACTTGTAATATAGATCTCCATGAGAAATTCCATCCTTTGTCATTGAAAgttgaatgtgaaatatttatgaaatgctATGGGGGGGAGGATTTTCTCCAAATGAAATGTCTAGAAGAGATGAAACTTTTGTACatttgagaaaatgttttttaatatggagGGAGATTTAAAGGAGTTTGTTACCAAGTGCATACTGGACAAGGTATGGACAGGtcagcagtttttatttttaatttcagaaaataaaactaaatatgtttgcatgttttcaatTTCTCAGCCATGTTGTCTACTGCTCCTAAACATCTGATGCTGCATTCATAAAACATAAGTGTATAAATActgattaaactgttttgtcACAATTAAGCAAGATCTGAATGGATTCTATCACCACCCATACTCTGTACCTGATTATGAATACATCACAGAGATTTCAAAGAAAATTagatttcattttctgtaataagCTAAATTGAAAGGGAAAAGGTGAGCTGTCTGATGGACCAGGAGAATCAGGAGCACTCAAGGGTTGTTGAAACGTGGTAGATCTGTGTCCTTATTCTTCTCTTTAACTCTCGGATCATCTGGCAGACTGCTAAGGGATAGCAAAAGTACACTGCGGCCCAGTCCCCACAGACACTGCCCTGTAGTTTGTATCTTTCCCTAATCCCTACGCGCATGGCAAACGTGGAACCCGGGAGCAGCGGTAAGAACAGGCACTCGCCGTACTGGTTCGCCAAGCTAAGGTCCAAACAGCAGGGGGACACTGCACCCACAACacAGATGGTCTTGTCGCTGCACACATTGAAGAGGCCCGTGCTCCAGTCACCCCCCGTCTGAGTGATGGTCGTCACAGTGGTCGTGGTGACGCCCAGGCCCGGCTGAGTGACGATAGGAAGGTCTGCCATCGTCCCCGTATATTCAGGGACCAAGTCAGTCAGATACAAGAGGCATCGGAGTCTCTCAAATTAAGCCTTGCAAGCAGAAAGGCAAGGAAAATAAGCACAATTATAGTTATACactatttgtatgtaattaaagaaaaaatatatatcatgctgacagaattaaaaaaaa

Function

GO: NA

KEGG:

id description
K12171 SH3RF, POSH; E3 ubiquitin-protein ligase SH3RF

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00011294 True 4940 mRNA 0.47 11 16978598 17004504

Neighbor

gene id symbol gene type direction distance location
AMCG00011291 pou4f3,LOC106603866,LOC106567605 coding downstream 42756 16934506 ~ 16935842 (-)
AMCG00011292 kif3a coding downstream 58404 16910320 ~ 16920194 (-)
AMCG00011286 NA coding downstream 174308 16776351 ~ 16804290 (-)
AMCG00011282 NA coding downstream 214103 16753656 ~ 16764495 (-)
AMCG00011284 NA coding downstream 232386 16745597 ~ 16746212 (-)
AMCG00011297 kctd16,LOC106603861 coding upstream 143511 17148015 ~ 17159586 (-)
AMCG00011299 kctd16,LOC106603861 coding upstream 169193 17173697 ~ 17203530 (-)
AMCG00011301 arhgap26,LOC107713172,LOC107661718 coding upstream 307947 17312451 ~ 17342762 (-)
AMCG00011304 NA coding upstream 375222 17379726 ~ 17395987 (-)
AMCG00011303 NA coding upstream 429998 17434502 ~ 17452768 (-)
G105607 NA non-coding downstream 83524 16893960 ~ 16895074 (-)
G105553 NA non-coding downstream 253445 16655247 ~ 16725153 (-)
G105479 NA non-coding downstream 731297 16244696 ~ 16247301 (-)
G105473 vdac1,LOC106567523,LOC107557296 non-coding downstream 740913 16236128 ~ 16237685 (-)
G105454 zgc:56064,LOC102205414,LOC107684868,LOC107564119 non-coding downstream 837260 16139099 ~ 16141338 (-)
G105701 NA non-coding upstream 305286 17309790 ~ 17312068 (-)
G105752 NA non-coding upstream 554898 17559402 ~ 17561795 (-)
G105761 LOC103029292,LOC108441031,LOC106604913,LOC108424167,LOC103354367 non-coding upstream 559665 17564169 ~ 17566963 (-)
G105774 NA non-coding upstream 749823 17754327 ~ 17755758 (-)
G105782 NA non-coding upstream 792939 17797443 ~ 17800287 (-)
AMCG00011290 rbm27,LOC106567487 other downstream 17529 16943932 ~ 16961069 (-)
AMCG00011271 LOC107562913 other downstream 880419 16043371 ~ 16098179 (-)
AMCG00011259 pcbd2,LOC107386701,LOC105890513,LOC106941140,LOC103129816 other downstream 1004726 15963338 ~ 15973872 (-)
AMCG00011251 gfpt2,LOC106611946,LOC105024910,LOC108240504,LOC107375897 other downstream 1462923 15499534 ~ 15515675 (-)
G105290 LOC108429417 other downstream 1605419 15370402 ~ 15373179 (-)
AMCG00011313 NA other upstream 713122 17717626 ~ 17751099 (-)
G105770 NA other upstream 746749 17751253 ~ 17751502 (-)
G105793 NA other upstream 995164 17999668 ~ 18000445 (-)
AMCG00011316 LOC107664359,LOC107560145,LOC108427843,LOC107752026,LOC105007072,LOC103354679 other upstream 1176142 18180646 ~ 18191195 (-)
G105890 NA other upstream 2097789 19102293 ~ 19105269 (-)

Expression


Co-expression Network